Variant report

Variant	rs56725603
Chromosome Location	chr3:24386193-24386194
allele	-/AT/ATAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24383601..24387139-chr3:24393091..24396535,3	MCF-7	breast:
2	chr3:24372202..24374757-chr3:24385169..24387153,2	K562	blood:
3	chr3:24385070..24386967-chr3:24394985..24396979,2	K562	blood:
4	chr3:24379487..24381973-chr3:24384206..24386617,2	MCF-7	breast:
5	chr3:24385945..24388354-chr3:24389549..24391848,2	K562	blood:
6	chr3:24382728..24384570-chr3:24386008..24388261,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1354598	0.85[AFR][1000 genomes]
rs17014565	0.85[AFR][1000 genomes]
rs73041659	0.85[AFR][1000 genomes]
rs73825623	0.85[AFR][1000 genomes]
rs73825625	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24357200-24393000	Weak transcription	Esophagus	oesophagus
2	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24372400-24393200	Weak transcription	Fetal Stomach	stomach
4	chr3:24377800-24390000	Weak transcription	Right Atrium	heart
5	chr3:24378800-24386400	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:24379600-24393200	Weak transcription	Gastric	stomach
7	chr3:24380200-24386600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:24381000-24387400	Enhancers	Colon Smooth Muscle	Colon
9	chr3:24381000-24394800	Weak transcription	Brain Germinal Matrix	brain
10	chr3:24381400-24386400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:24381600-24386200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:24381800-24386200	Weak transcription	Adipose Nuclei	Adipose
13	chr3:24381800-24393200	Weak transcription	Stomach Mucosa	stomach
14	chr3:24382200-24386600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:24383600-24386200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:24383600-24387000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:24384200-24386800	Enhancers	NHLF	lung
18	chr3:24384200-24389800	Weak transcription	Aorta	Aorta
19	chr3:24384400-24393000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:24384400-24393200	Weak transcription	Right Ventricle	heart
21	chr3:24384800-24386400	Weak transcription	Small Intestine	intestine
22	chr3:24384800-24386600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:24384800-24386600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:24384800-24393000	Weak transcription	Psoas Muscle	Psoas
25	chr3:24385000-24386400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:24385000-24386400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:24385000-24393200	Weak transcription	Fetal Intestine Small	intestine
28	chr3:24385200-24393000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:24385400-24386600	Weak transcription	Brain Substantia Nigra	brain
30	chr3:24385800-24386600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:24385800-24386600	Enhancers	Liver	Liver
32	chr3:24385800-24387000	Enhancers	Fetal Lung	lung
33	chr3:24385800-24387000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:24385800-24387200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr3:24385800-24389400	Weak transcription	K562	blood
36	chr3:24386000-24386400	Enhancers	Pancreatic Islets	Pancreatic Islet

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