Variant report

Variant	rs567269176
Chromosome Location	chr6:33399767-33399768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33263619..33269524-chr6:33392449..33400505,13	K562	blood:
2	chr6:33395899..33401993-chr6:33420102..33423796,11	MCF-7	breast:
3	chr6:33174005..33176257-chr6:33398590..33400783,2	MCF-7	breast:
4	chr6:33358270..33361160-chr6:33397889..33401606,4	K562	blood:
5	chr6:33398677..33403495-chr6:33419995..33423723,6	K562	blood:
6	chr6:33173944..33176266-chr6:33397713..33400457,2	K562	blood:
7	chr6:33392449..33400629-chr6:33419013..33424035,12	MCF-7	breast:
8	chr6:33399707..33401893-chr6:33408144..33410005,2	MCF-7	breast:
9	chr6:33237732..33247113-chr6:33390735..33401356,31	K562	blood:
10	chr6:33244147..33247113-chr6:33398461..33400467,3	K562	blood:
11	chr6:33357884..33361160-chr6:33397889..33401606,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223501	Chromatin interaction
ENSG00000213588	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000199036	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv885769	chr6:33377522-33412197	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv932196	chr6:33383131-33400706	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
6	nsv1019212	chr6:33398031-33413930	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33396000-33401400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:33396200-33399800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr6:33396200-33400000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr6:33396200-33400000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr6:33396200-33400200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr6:33396200-33400200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:33396200-33400400	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr6:33396200-33400400	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:33396400-33401200	Enhancers	Spleen	Spleen
10	chr6:33396400-33401600	Enhancers	Fetal Heart	heart
11	chr6:33396400-33403000	Weak transcription	Ovary	ovary
12	chr6:33396400-33405200	Weak transcription	Psoas Muscle	Psoas
13	chr6:33396600-33400600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:33396600-33400600	Enhancers	Fetal Muscle Leg	muscle
15	chr6:33396600-33400600	Enhancers	Lung	lung
16	chr6:33396600-33400800	Weak transcription	Right Atrium	heart
17	chr6:33396600-33401000	Weak transcription	HSMMtube	muscle
18	chr6:33396600-33416000	Weak transcription	Pancreas	Pancrea
19	chr6:33396800-33399800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:33396800-33402000	Enhancers	Fetal Lung	lung
21	chr6:33396800-33403000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:33396800-33403000	Weak transcription	Aorta	Aorta
23	chr6:33397200-33399800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
24	chr6:33397200-33400800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr6:33397600-33400000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:33398000-33400000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr6:33398000-33400200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr6:33398000-33401400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:33398200-33400200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:33398200-33401400	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr6:33398200-33401400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:33398400-33399800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:33398400-33399800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:33398400-33400200	Enhancers	Placenta	Placenta
35	chr6:33398400-33401800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:33398400-33402000	Enhancers	Right Ventricle	heart
37	chr6:33398600-33400800	Flanking Active TSS	Fetal Thymus	thymus
38	chr6:33398600-33401200	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr6:33398600-33402200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr6:33398600-33403000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:33398600-33403000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:33398800-33399800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:33398800-33400000	Enhancers	Colonic Mucosa	Colon
44	chr6:33398800-33400200	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr6:33398800-33400200	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:33398800-33400200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr6:33398800-33400400	Flanking Active TSS	Primary B cells from peripheral blood	blood
48	chr6:33398800-33400400	Enhancers	Fetal Brain Male	brain
49	chr6:33398800-33400400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr6:33398800-33400600	Active TSS	H9 Cell Line	embryonic stem cell

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