Variant report

Variant	rs56728555
Chromosome Location	chr3:112468686-112468687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1154274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685875	1.00[EUR][1000 genomes]
rs57140268	1.00[EUR][1000 genomes]
rs57311206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57880608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58012609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58190520	1.00[EUR][1000 genomes]
rs58720537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59190393	1.00[EUR][1000 genomes]
rs59583995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60177418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60266638	1.00[EUR][1000 genomes]
rs60945656	1.00[EUR][1000 genomes]
rs61564938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6809016	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6809740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112459000-112470600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:112464200-112469200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:112464400-112469200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:112464400-112470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:112465000-112469200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:112465000-112469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:112465800-112470800	Weak transcription	NHDF-Ad	bronchial
8	chr3:112466000-112469200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:112466200-112470400	Weak transcription	NH-A	brain
10	chr3:112466200-112470400	Weak transcription	Osteobl	bone
11	chr3:112467000-112470800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:112467200-112469400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:112468000-112470600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:112468000-112472000	Enhancers	A549	lung
15	chr3:112468000-112478200	Weak transcription	K562	blood
16	chr3:112468000-112488200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:112468200-112471600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:112468600-112469000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:112468600-112470600	Weak transcription	Stomach Mucosa	stomach

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