Variant report

Variant	rs56731041
Chromosome Location	chr6:132637165-132637166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10080548	1.00[AMR][1000 genomes]
rs58161297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493277	1.00[AMR][1000 genomes]
rs9493278	1.00[AMR][1000 genomes]
rs9493281	1.00[AMR][1000 genomes]
rs9493285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
2	chr6:132633800-132638600	Weak transcription	Osteobl	bone
3	chr6:132634600-132637400	Strong transcription	NHDF-Ad	bronchial
4	chr6:132634800-132638200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:132635000-132638600	Weak transcription	Esophagus	oesophagus
6	chr6:132635200-132637400	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:132635200-132638400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132635400-132637400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:132635400-132639600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132635600-132655000	Weak transcription	NH-A	brain
11	chr6:132636200-132637400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:132636400-132637600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:132636600-132637600	Weak transcription	Fetal Brain Female	brain
14	chr6:132637000-132637200	Strong transcription	Fetal Kidney	kidney
15	chr6:132637000-132637800	Weak transcription	Fetal Lung	lung
16	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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