Variant report

Variant	rs567365045
Chromosome Location	chr6:13191249-13191250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13182449..13185270-chr6:13189938..13191511,2	MCF-7	breast:
2	chr17:64637600..64638236-chr6:13191039..13191624,2	MCF-7	breast:
3	chr6:13184861..13186722-chr6:13190898..13192711,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112137	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv11217	chr6:13190995-13192104	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv10481	chr6:13191100-13192936	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv600993	chr6:13191212-13191869	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
3	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
6	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:13182200-13192800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:13183000-13195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
12	chr6:13184200-13197000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:13185000-13191600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:13185000-13202800	Weak transcription	Brain Anterior Caudate	brain
15	chr6:13185200-13191400	Weak transcription	Right Ventricle	heart
16	chr6:13185200-13204000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:13185200-13205200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:13185400-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:13185400-13204800	Weak transcription	Lung	lung
20	chr6:13185400-13205800	Weak transcription	Aorta	Aorta
21	chr6:13185400-13205800	Weak transcription	Pancreas	Pancrea
22	chr6:13185800-13191600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
24	chr6:13187800-13192600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:13189400-13196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:13191000-13193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:13191200-13191600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:13191200-13191600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:13191200-13191800	Enhancers	Fetal Heart	heart
30	chr6:13191200-13192000	Enhancers	Fetal Intestine Large	intestine
31	chr6:13191200-13192400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:13191200-13192400	Enhancers	Fetal Intestine Small	intestine
33	chr6:13191200-13204400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links