Variant report

Variant	rs56739111
Chromosome Location	chr1:103646542-103646543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11164688	1.00[AMR][1000 genomes]
rs11164691	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11164692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11164700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11164708	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800914	1.00[EUR][1000 genomes]
rs12057475	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063514	0.84[AFR][1000 genomes]
rs12070729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12088375	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096038	0.83[AFR][1000 genomes]
rs12096158	1.00[EUR][1000 genomes]
rs13374198	1.00[EUR][1000 genomes]
rs13374615	1.00[EUR][1000 genomes]
rs13374856	1.00[EUR][1000 genomes]
rs13375103	1.00[EUR][1000 genomes]
rs13375231	1.00[EUR][1000 genomes]
rs13375442	1.00[EUR][1000 genomes]
rs13375833	1.00[EUR][1000 genomes]
rs57183243	1.00[EUR][1000 genomes]
rs57548736	1.00[EUR][1000 genomes]
rs57799890	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57843906	1.00[EUR][1000 genomes]
rs58181035	1.00[EUR][1000 genomes]
rs58822881	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58882054	1.00[EUR][1000 genomes]
rs59050890	1.00[EUR][1000 genomes]
rs59640131	1.00[EUR][1000 genomes]
rs60534143	1.00[EUR][1000 genomes]
rs61708772	1.00[EUR][1000 genomes]
rs72987842	1.00[EUR][1000 genomes]
rs72991510	1.00[EUR][1000 genomes]
rs72991548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72991550	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72991570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72991572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74108574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74108593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7542495	1.00[EUR][1000 genomes]
rs7542602	1.00[EUR][1000 genomes]
rs7552698	1.00[EUR][1000 genomes]
rs7552870	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2830089	chr1:103615938-103670474	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv526337	chr1:103636607-103704266	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv947540	chr1:103643208-103649306	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv159319	chr1:103645616-103655285	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103646000-103646600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:103646000-103647200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:103646000-103647200	Enhancers	HSMM	muscle
4	chr1:103646000-103647200	Enhancers	NH-A	brain
5	chr1:103646000-103647400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:103646000-103647400	Enhancers	Fetal Heart	heart
7	chr1:103646200-103646600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:103646200-103646600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:103646200-103646600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:103646200-103646600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:103646200-103646600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:103646200-103646600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:103646400-103646800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:103646400-103646800	Active TSS	A549	lung

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