Variant report

Variant	rs56739685
Chromosome Location	chr2:113528470-113528471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3783589	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113522800-113541600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113523000-113529400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:113523400-113529800	Weak transcription	K562	blood
4	chr2:113523400-113531400	Weak transcription	Fetal Heart	heart
5	chr2:113523400-113539200	Weak transcription	Hela-S3	cervix
6	chr2:113523800-113532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:113523800-113534600	Weak transcription	HMEC	breast
8	chr2:113525800-113529800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:113525800-113529800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:113526200-113529800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:113526200-113531600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:113526200-113532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:113526200-113532200	Weak transcription	NHEK	skin
14	chr2:113526400-113529400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:113526800-113529400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr2:113526800-113537800	Weak transcription	NHDF-Ad	bronchial
17	chr2:113528400-113533800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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