Variant report

Variant	rs567401789
Chromosome Location	chr22:33751390-33751391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33746224..33749139-chr22:33750199..33751846,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv933455	chr22:33532697-33915429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1059927	chr22:33615699-33904339	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv544682	chr22:33615699-33904339	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1061485	chr22:33670971-33885169	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
9	nsv459876	chr22:33746624-33776430	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv588898	chr22:33746624-33776430	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3409488	chr22:33750902-33752800	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33727200-33757800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr22:33731400-33773400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr22:33731400-33779800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr22:33732600-33760600	Weak transcription	Right Ventricle	heart
5	chr22:33733800-33754000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr22:33733800-33757600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:33734000-33754000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:33734000-33777800	Weak transcription	Pancreas	Pancrea
9	chr22:33734400-33757400	Weak transcription	Gastric	stomach
10	chr22:33734600-33757400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr22:33734600-33760600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr22:33735600-33754400	Weak transcription	Ovary	ovary
13	chr22:33738000-33776800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr22:33746400-33759000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr22:33746800-33757800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr22:33746800-33761400	Weak transcription	Fetal Intestine Small	intestine
17	chr22:33747000-33754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr22:33747000-33756400	Weak transcription	Fetal Stomach	stomach
19	chr22:33747200-33754000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr22:33747200-33755000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr22:33747200-33757400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr22:33747400-33755800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr22:33747400-33758000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr22:33747400-33762600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr22:33747400-33768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr22:33747400-33775600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr22:33748200-33766800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr22:33749000-33755800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr22:33749600-33751600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr22:33750000-33751400	Enhancers	A549	lung
31	chr22:33750000-33752000	Enhancers	Osteobl	bone
32	chr22:33750200-33752200	Weak transcription	Left Ventricle	heart
33	chr22:33750400-33751600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr22:33750400-33751800	Enhancers	Liver	Liver
35	chr22:33750800-33751600	Enhancers	HepG2	liver
36	chr22:33751000-33751400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr22:33751200-33751400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr22:33751200-33751400	Flanking Active TSS	Fetal Heart	heart
39	chr22:33751200-33751600	Enhancers	Aorta	Aorta
40	chr22:33751200-33751600	Enhancers	HSMM	muscle
41	chr22:33751200-33751600	Enhancers	HSMMtube	muscle
42	chr22:33751200-33751800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links