Variant report

Variant	rs567403095
Chromosome Location	chr1:186875796-186875797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv548407	chr1:186875459-186951429	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186839200-186884800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:186854000-186897200	Weak transcription	Lung	lung
3	chr1:186854400-186880000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:186864600-186897000	Weak transcription	Esophagus	oesophagus
5	chr1:186866200-186880800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:186866200-186881000	Weak transcription	Adipose Nuclei	Adipose
7	chr1:186866200-186883200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:186866200-186885000	Weak transcription	HUVEC	blood vessel
9	chr1:186866400-186880200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:186866400-186880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:186866400-186883000	Weak transcription	A549	lung
12	chr1:186868800-186897000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:186869000-186896600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:186871000-186884600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:186871400-186904000	Weak transcription	Hela-S3	cervix
16	chr1:186871600-186880200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:186871800-186880200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:186873600-186879800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:186873600-186881000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:186873600-186881200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr1:186873800-186880000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr1:186873800-186880200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:186873800-186880400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:186873800-186896800	Weak transcription	Small Intestine	intestine
25	chr1:186874000-186876400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:186874000-186880200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:186874000-186880200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:186874800-186876000	Enhancers	Colon Smooth Muscle	Colon
29	chr1:186875400-186875800	Enhancers	Fetal Stomach	stomach
30	chr1:186875600-186875800	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links