The 2.0 version of rSNPBase

Variant report

Variant rs567422242
Chromosome Location chr1:168440120-168440121
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:168433800-168443400 Weak transcription Liver Liver
2 chr1:168434400-168443600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:168434800-168440800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr1:168435000-168440400 Enhancers Primary T helper cells fromperipheralblood blood
5 chr1:168435000-168440600 Enhancers Primary T helper naive cells from peripheral blood blood
6 chr1:168435000-168440600 Enhancers Rectal Smooth Muscle rectum
7 chr1:168435200-168440200 Enhancers Muscle Satellite Cultured Cells --
8 chr1:168435200-168440400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:168435200-168440400 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr1:168435200-168440400 Enhancers HSMM muscle
11 chr1:168435200-168440600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:168435200-168440600 Enhancers Colon Smooth Muscle Colon
13 chr1:168435200-168440600 Enhancers Skeletal Muscle Female skeletal muscle
14 chr1:168435200-168440600 Enhancers HMEC breast
15 chr1:168435200-168440600 Enhancers NHEK skin
16 chr1:168435200-168440800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:168435400-168440600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:168435800-168451400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr1:168436200-168440200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr1:168436400-168441400 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:168436800-168440600 Enhancers Skeletal Muscle Male skeletal muscle
22 chr1:168437000-168440600 Enhancers Duodenum Mucosa Duodenum
23 chr1:168437000-168440800 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr1:168437200-168440200 Enhancers NH-A brain
25 chr1:168437200-168440600 Enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr1:168437200-168440600 Enhancers Primary T killer memory cells from peripheral blood blood
27 chr1:168437200-168440800 Enhancers Primary T helper cells PMA-I stimulated --
28 chr1:168437400-168440600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr1:168437400-168440600 Enhancers HepG2 liver
30 chr1:168437400-168440800 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:168437600-168440600 Enhancers Primary T killer naive cells fromperipheralblood blood
32 chr1:168437600-168440600 Enhancers NHLF lung
33 chr1:168437600-168440800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
34 chr1:168437800-168440200 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr1:168437800-168440400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:168437800-168440600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
37 chr1:168438400-168440200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:168438600-168440600 Enhancers ES-I3 Cell Line embryonic stem cell
39 chr1:168438600-168440600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:168438800-168440400 Weak transcription Fetal Kidney kidney
41 chr1:168438800-168440600 Enhancers Hela-S3 cervix
42 chr1:168438800-168440800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:168439000-168440200 Weak transcription Fetal Stomach stomach
44 chr1:168439200-168440200 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:168439200-168440400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:168439200-168440400 Weak transcription Aorta Aorta
47 chr1:168439200-168440400 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:168439200-168440600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr1:168439200-168440600 Enhancers A549 lung
50 chr1:168439200-168450200 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015