Variant report

Variant	rs56743833
Chromosome Location	chr8:99158155-99158156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99152789..99156132-chr8:99156818..99159983,3	MCF-7	breast:
2	chr8:99152693..99155041-chr8:99156901..99160808,3	K562	blood:
3	chr8:99128561..99130924-chr8:99157544..99160362,3	K562	blood:
4	chr8:99157530..99160123-chr8:99161271..99164401,3	K562	blood:

Variant related genes	Relation type
ENSG00000132541	Chromatin interaction
ENSG00000104356	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2447510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99130200-99164400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:99130200-99166600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:99130400-99177000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:99130800-99158400	Weak transcription	Stomach Mucosa	stomach
5	chr8:99130800-99161200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:99131800-99173800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:99132000-99158200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:99132600-99171600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:99134200-99158400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr8:99134200-99158800	Strong transcription	HMEC	breast
11	chr8:99134400-99158200	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr8:99134400-99165400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:99134400-99167200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:99134400-99171800	Strong transcription	Dnd41	blood
15	chr8:99134600-99158200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:99134600-99158400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:99134800-99158800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:99135200-99172200	Strong transcription	Liver	Liver
19	chr8:99135400-99165600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:99135400-99167200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr8:99135400-99171000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr8:99135400-99171200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:99135400-99171200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:99135600-99161600	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr8:99135600-99167000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:99135600-99167200	Strong transcription	Left Ventricle	heart
27	chr8:99135600-99172200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:99135600-99172200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr8:99140400-99163400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:99140400-99172000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:99140800-99163800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr8:99145400-99169800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:99145800-99158400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:99145800-99169600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:99146000-99159200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:99146000-99165400	Strong transcription	Adipose Nuclei	Adipose
37	chr8:99146000-99167200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:99146400-99158200	Strong transcription	HUVEC	blood vessel
39	chr8:99146400-99161800	Strong transcription	Primary T cells from cord blood	blood
40	chr8:99146400-99169800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:99146600-99158200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:99146600-99159000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:99146600-99171800	Strong transcription	Fetal Stomach	stomach
44	chr8:99146800-99158800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:99146800-99170600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr8:99148000-99158400	Strong transcription	Fetal Intestine Large	intestine
47	chr8:99148400-99161800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr8:99148400-99165000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr8:99148400-99167200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr8:99148800-99160000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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