Variant report

Variant	rs56745056
Chromosome Location	chr8:11583610-11583611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11581565..11584729-chr8:11586441..11588114,3	K562	blood:
2	chr8:11583078..11587577-chr8:11589128..11594677,6	K562	blood:
3	chr8:11509386..11512039-chr8:11582256..11584769,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs62489315	1.00[EUR][1000 genomes]
rs62489316	1.00[EUR][1000 genomes]
rs62489318	1.00[EUR][1000 genomes]
rs62489320	1.00[EUR][1000 genomes]
rs62489321	1.00[EUR][1000 genomes]
rs62489323	1.00[EUR][1000 genomes]
rs62489324	1.00[EUR][1000 genomes]
rs62489340	1.00[EUR][1000 genomes]
rs62489341	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62489342	1.00[EUR][1000 genomes]
rs62489346	1.00[EUR][1000 genomes]
rs62489347	1.00[EUR][1000 genomes]
rs62489350	1.00[EUR][1000 genomes]
rs62489351	1.00[EUR][1000 genomes]
rs7832153	1.00[EUR][1000 genomes]
rs7844208	1.00[EUR][1000 genomes]
rs7845076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11576200-11584800	Enhancers	Liver	Liver
2	chr8:11580800-11585200	Enhancers	Right Ventricle	heart
3	chr8:11581000-11586800	Enhancers	Left Ventricle	heart
4	chr8:11581400-11584800	Genic enhancers	Gastric	stomach
5	chr8:11581400-11585000	Strong transcription	Duodenum Mucosa	Duodenum
6	chr8:11581800-11585000	Genic enhancers	HepG2	liver
7	chr8:11582000-11584600	Enhancers	Right Atrium	heart
8	chr8:11582200-11587200	Enhancers	Fetal Heart	heart
9	chr8:11582600-11584800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:11582600-11584800	Bivalent Enhancer	Placenta	Placenta
11	chr8:11582600-11585000	Enhancers	Pancreas	Pancrea
12	chr8:11582600-11589000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:11583000-11584000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:11583000-11585000	Enhancers	HMEC	breast
15	chr8:11583200-11584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:11583200-11584800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:11583200-11585000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:11583200-11590600	Enhancers	Ovary	ovary
19	chr8:11583400-11584600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:11583400-11584800	Enhancers	Stomach Mucosa	stomach
21	chr8:11583400-11585000	Bivalent Enhancer	NHEK	skin
22	chr8:11583600-11583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:11583600-11584800	Genic enhancers	Fetal Intestine Small	intestine

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