Variant report

Variant	rs567470322
Chromosome Location	chr7:102791783-102791784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr7:102791501-102792077	MCF-7	breast:	n/a	n/a
2	ZNF217	chr7:102791585-102791843	MCF-7	breast:	n/a	n/a
3	NR2F2	chr7:102791435-102792000	MCF-7	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:102759379..102762894-chr7:102787802..102793821,6	K562	blood:
2	chr7:102790144..102791929-chr7:102937725..102939474,2	MCF-7	breast:
3	chr7:102713709..102715211-chr7:102789642..102791984,2	K562	blood:
4	chr7:102714022..102717631-chr7:102788669..102792237,6	MCF-7	breast:

No data

Variant related genes	Relation type
NAPEPLD	TF binding region
ENSG00000170632	Chromatin interaction
ENSG00000105819	Chromatin interaction
ENSG00000161040	Chromatin interaction
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966872	chr7:102791751-102798505	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102790200-102792400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:102790200-102793600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:102790200-102793600	Enhancers	HepG2	liver
4	chr7:102790200-102803200	Weak transcription	Gastric	stomach
5	chr7:102790400-102791800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:102790400-102792000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:102790400-102792200	Enhancers	Small Intestine	intestine
8	chr7:102790400-102793000	Weak transcription	Aorta	Aorta
9	chr7:102790400-102793400	Weak transcription	Right Atrium	heart
10	chr7:102790400-102793600	Enhancers	Fetal Intestine Small	intestine
11	chr7:102790400-102794000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:102790400-102794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:102790400-102796800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:102790600-102792600	Enhancers	Stomach Mucosa	stomach
15	chr7:102790600-102793200	Enhancers	Liver	Liver
16	chr7:102790800-102792200	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr7:102790800-102795600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:102790800-102795800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:102790800-102795800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:102790800-102796200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:102791000-102792200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:102791000-102792200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:102791000-102792400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:102791000-102792400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:102791000-102794000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:102791000-102795600	Weak transcription	Brain Substantia Nigra	brain
27	chr7:102791000-102795800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr7:102791000-102795800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:102791000-102795800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:102791000-102796200	Weak transcription	Spleen	Spleen
31	chr7:102791200-102791800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:102791200-102791800	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:102791200-102794000	Weak transcription	GM12878-XiMat	blood
34	chr7:102791200-102794200	Enhancers	Fetal Intestine Large	intestine
35	chr7:102791200-102794800	Enhancers	K562	blood
36	chr7:102791400-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:102791400-102793200	Weak transcription	Colonic Mucosa	Colon
38	chr7:102791600-102791800	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr7:102791600-102792400	Weak transcription	Brain Anterior Caudate	brain

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