Variant report

Variant	rs567490856
Chromosome Location	chr1:161823959-161823960
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1014340	chr1:161822791-161852384	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161773400-161854400	Weak transcription	Small Intestine	intestine
2	chr1:161780400-161824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:161780600-161836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:161780800-161825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:161780800-161834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:161791800-161842000	Weak transcription	Brain Angular Gyrus	brain
7	chr1:161792200-161838000	Weak transcription	Fetal Brain Male	brain
8	chr1:161795200-161860200	Weak transcription	Lung	lung
9	chr1:161795800-161827600	Weak transcription	Gastric	stomach
10	chr1:161795800-161859000	Weak transcription	Pancreas	Pancrea
11	chr1:161802400-161825000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:161805800-161838200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr1:161805800-161846200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:161806200-161825600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:161808400-161863200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:161808600-161840200	Weak transcription	Right Ventricle	heart
17	chr1:161808800-161858800	Weak transcription	Spleen	Spleen
18	chr1:161809200-161827000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr1:161809400-161838000	Weak transcription	HMEC	breast
20	chr1:161810200-161824200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:161810200-161829000	Weak transcription	Stomach Mucosa	stomach
22	chr1:161810600-161835800	Weak transcription	Colonic Mucosa	Colon
23	chr1:161811400-161838400	Strong transcription	Primary B cells from cord blood	blood
24	chr1:161811800-161838200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:161813000-161834200	Weak transcription	Esophagus	oesophagus
26	chr1:161814200-161825600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:161815200-161834600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:161816000-161825200	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:161816000-161825400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:161816000-161826400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr1:161816000-161826400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:161816000-161826400	Strong transcription	Liver	Liver
33	chr1:161816200-161826400	Strong transcription	Dnd41	blood
34	chr1:161816400-161829800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:161816800-161824400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr1:161817000-161825400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:161817400-161825000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr1:161818400-161826400	Strong transcription	Primary T cells from cord blood	blood
39	chr1:161818800-161827000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:161819000-161828000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:161819200-161824600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:161819200-161825000	Weak transcription	Fetal Heart	heart
43	chr1:161819800-161824400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:161819800-161824600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:161819800-161826800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr1:161819800-161852600	Weak transcription	NHDF-Ad	bronchial
47	chr1:161820000-161825200	Strong transcription	Placenta	Placenta
48	chr1:161820000-161833000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:161820200-161824000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:161820200-161824200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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