Variant report

Variant	rs56749661
Chromosome Location	chr17:15281854-15281855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12449830	0.88[ASN][1000 genomes]
rs57107129	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58960550	0.88[ASN][1000 genomes]
rs59441616	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61559332	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73282303	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73282304	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15280000-15282200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:15280200-15282000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr17:15280200-15282200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr17:15280200-15282400	Enhancers	Fetal Intestine Small	intestine
5	chr17:15280600-15287000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:15281200-15282000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr17:15281200-15282000	Enhancers	Fetal Intestine Large	intestine
8	chr17:15281200-15282000	Enhancers	Fetal Kidney	kidney
9	chr17:15281200-15282000	Enhancers	HSMM	muscle
10	chr17:15281200-15282600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:15281200-15285600	Weak transcription	Colon Smooth Muscle	Colon
12	chr17:15281200-15285600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr17:15281200-15286000	Weak transcription	Placenta	Placenta
14	chr17:15281200-15286800	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:15281200-15287000	Weak transcription	Fetal Lung	lung
16	chr17:15281200-15287400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:15281200-15287400	Weak transcription	Ovary	ovary
18	chr17:15281200-15287400	Weak transcription	NHLF	lung
19	chr17:15281400-15282000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr17:15281400-15282000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:15281400-15285000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr17:15281400-15287400	Weak transcription	HMEC	breast
23	chr17:15281600-15284800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr17:15281600-15286800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:15281600-15287000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr17:15281600-15287000	Weak transcription	Brain Hippocampus Middle	brain
27	chr17:15281600-15287400	Weak transcription	Adipose Nuclei	Adipose
28	chr17:15281800-15287200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr17:15281800-15287200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr17:15281800-15287400	Weak transcription	HSMMtube	muscle
31	chr17:15281800-15287400	Weak transcription	NHDF-Ad	bronchial
32	chr17:15281800-15287400	Weak transcription	Osteobl	bone

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