Variant report

Variant	rs567499290
Chromosome Location	chr12:123557126-123557127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123555442..123558076-chr12:123754275..123756423,2	MCF-7	breast:
2	chr12:123547555..123551371-chr12:123552619..123557163,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111328	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388790	chr12:123275902-123655103	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv517200	chr12:123312051-123654498	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv832532	chr12:123395927-123573137	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv832533	chr12:123395927-123589290	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv427924	chr12:123412172-123722059	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
6	nsv455732	chr12:123427573-123574838	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv560492	chr12:123427573-123574838	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv560494	chr12:123478378-123560731	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1042550	chr12:123532028-123659500	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	esv3421941	chr12:123556899-123561197	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123542800-123563800	Enhancers	Left Ventricle	heart
2	chr12:123543800-123559000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:123544000-123559000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:123546400-123562400	Enhancers	Liver	Liver
5	chr12:123549600-123561000	Weak transcription	Hela-S3	cervix
6	chr12:123549800-123560000	Weak transcription	Stomach Mucosa	stomach
7	chr12:123550000-123559800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
8	chr12:123550000-123562400	Enhancers	Fetal Heart	heart
9	chr12:123550600-123559400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:123551000-123559000	Weak transcription	Primary B cells from cord blood	blood
11	chr12:123551000-123559200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr12:123551000-123560200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr12:123551200-123560400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:123551200-123561800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:123551400-123557600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr12:123551600-123557800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:123553400-123557400	Enhancers	Lung	lung
18	chr12:123553600-123560000	Transcr. at gene 5' and 3'	Thymus	Thymus
19	chr12:123553800-123557400	Enhancers	Brain Cingulate Gyrus	brain
20	chr12:123553800-123563800	Enhancers	Right Ventricle	heart
21	chr12:123554000-123559200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr12:123554000-123563000	Enhancers	Right Atrium	heart
23	chr12:123554000-123563800	Enhancers	Brain Hippocampus Middle	brain
24	chr12:123554200-123557400	Enhancers	Brain Angular Gyrus	brain
25	chr12:123554200-123557400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr12:123554200-123557400	Enhancers	Fetal Muscle Leg	muscle
27	chr12:123554400-123557200	Enhancers	Brain Anterior Caudate	brain
28	chr12:123554400-123557400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr12:123554400-123557600	Enhancers	Esophagus	oesophagus
30	chr12:123554400-123558400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr12:123554400-123560400	Enhancers	Colon Smooth Muscle	Colon
32	chr12:123554600-123559000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr12:123555000-123557200	Enhancers	Psoas Muscle	Psoas
34	chr12:123555000-123557800	Enhancers	Fetal Stomach	stomach
35	chr12:123555000-123558800	Enhancers	Fetal Brain Female	brain
36	chr12:123555000-123559000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr12:123555000-123559200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr12:123555200-123558200	Enhancers	HepG2	liver
39	chr12:123555200-123560000	Weak transcription	Fetal Intestine Large	intestine
40	chr12:123555400-123557200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:123555400-123557200	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr12:123555400-123557600	Genic enhancers	Primary T cells from cord blood	blood
43	chr12:123555600-123557200	Enhancers	Brain Substantia Nigra	brain
44	chr12:123555600-123557800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr12:123555600-123559000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:123555600-123559000	Enhancers	Fetal Brain Male	brain
47	chr12:123555600-123559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:123555600-123559600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr12:123555600-123561200	Weak transcription	Pancreas	Pancrea
50	chr12:123555800-123559600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links