Variant report

Variant	rs56750732
Chromosome Location	chr7:21215112-21215113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11531486	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2390480	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35022772	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4273757	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4534047	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58465671	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs875928	1.00[EUR][1000 genomes]
rs875930	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs887718	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs887719	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9639369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21212400-21215200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:21213400-21215200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:21215000-21215600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:21215000-21215800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:21215000-21216200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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