Variant report

Variant	rs567535120
Chromosome Location	chr12:12120038-12120039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898805	chr12:12119414-12156322	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12112000-12121400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr12:12112000-12123000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:12112600-12120400	Weak transcription	Fetal Thymus	thymus
4	chr12:12112800-12120200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:12114600-12122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:12115000-12121000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:12115000-12122800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:12116800-12121000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr12:12117000-12120400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:12117400-12121600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:12117400-12121800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr12:12118800-12120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:12119200-12121200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:12120000-12121600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:12120000-12121800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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