Variant report

Variant	rs567537655
Chromosome Location	chr5:145485982-145485983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145467931..145470149-chr5:145485691..145487881,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv1796142	chr5:145484386-145505556	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv1827255	chr5:145484386-145505556	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145459800-145492000	Weak transcription	HSMMtube	muscle
2	chr5:145469600-145492000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145471800-145492600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:145473600-145491400	Weak transcription	Fetal Brain Female	brain
5	chr5:145474000-145491600	Weak transcription	Primary B cells from cord blood	blood
6	chr5:145474200-145491000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:145474400-145492200	Weak transcription	Brain Angular Gyrus	brain
8	chr5:145474600-145491000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:145475000-145495800	Weak transcription	Brain Substantia Nigra	brain
10	chr5:145475200-145491000	Weak transcription	A549	lung
11	chr5:145475200-145491800	Weak transcription	Primary T cells from cord blood	blood
12	chr5:145478000-145487800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:145478000-145492600	Weak transcription	Fetal Stomach	stomach
14	chr5:145478200-145497600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:145478400-145491200	Weak transcription	Brain Anterior Caudate	brain
16	chr5:145478400-145492800	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:145478400-145493400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:145478400-145497600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:145478800-145492600	Weak transcription	Fetal Intestine Small	intestine
20	chr5:145480200-145494000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:145481200-145493800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:145481200-145560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:145481400-145489200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:145481400-145491000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:145481600-145498400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr5:145481800-145491200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:145481800-145492000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:145482000-145491600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr5:145482200-145491800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr5:145482200-145497600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:145482200-145497800	Weak transcription	Brain Germinal Matrix	brain
32	chr5:145482200-145500800	Weak transcription	Aorta	Aorta
33	chr5:145482400-145491000	Weak transcription	Hela-S3	cervix
34	chr5:145482400-145491400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr5:145482400-145491600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:145482400-145497800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr5:145482600-145491400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:145482600-145492200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:145482600-145492400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:145482600-145501200	Weak transcription	Thymus	Thymus
41	chr5:145482800-145491400	Weak transcription	Adipose Nuclei	Adipose
42	chr5:145482800-145491600	Weak transcription	HUVEC	blood vessel
43	chr5:145482800-145491800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:145482800-145492600	Weak transcription	Pancreas	Pancrea
45	chr5:145482800-145492800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:145483000-145491400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr5:145483000-145491400	Weak transcription	Liver	Liver
48	chr5:145483000-145492000	Weak transcription	Left Ventricle	heart
49	chr5:145483000-145493600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr5:145483000-145497600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links