Variant report

Variant	rs567579319
Chromosome Location	chr11:119612041-119612042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:119612041..119612599-chr11:119978926..119979560,2	MCF-7	breast:
2	chr11:119611511..119614247-chr11:119631604..119633429,2	MCF-7	breast:
3	chr11:119591659..119592433-chr11:119611738..119612581,2	MCF-7	breast:
4	chr11:119610610..119612359-chr11:119615622..119618521,2	K562	blood:
5	chr11:119536864..119537801-chr11:119611746..119612718,4	MCF-7	breast:
6	chr11:119537219..119537738-chr11:119611684..119612227,2	K562	blood:
7	chr11:119610859..119613381-chr11:119617021..119619803,2	K562	blood:

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3357144	chr11:119610642-119614840	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119601200-119612200	Weak transcription	Right Atrium	heart
2	chr11:119601400-119612200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:119601400-119612200	Weak transcription	HMEC	breast
4	chr11:119601600-119612200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:119601800-119612200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:119601800-119612200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119605400-119612200	Enhancers	Fetal Intestine Small	intestine
8	chr11:119609200-119612600	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:119609800-119613600	Enhancers	Pancreas	Pancrea
10	chr11:119610400-119614400	Enhancers	Gastric	stomach
11	chr11:119610600-119612400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:119611200-119612600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:119611200-119614400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr11:119611400-119612200	Bivalent Enhancer	Fetal Intestine Large	intestine
15	chr11:119611600-119612200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr11:119611600-119612600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:119611600-119612800	Bivalent Enhancer	Brain Substantia Nigra	brain
18	chr11:119611600-119614400	Bivalent Enhancer	Stomach Mucosa	stomach
19	chr11:119611800-119612200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:119611800-119612200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:119611800-119612200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:119611800-119612200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
23	chr11:119611800-119612200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
24	chr11:119611800-119613200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr11:119611800-119613200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr11:119612000-119612200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:119612000-119612200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr11:119612000-119612200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
29	chr11:119612000-119612200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:119612000-119612200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:119612000-119612200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:119612000-119612200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:119612000-119612200	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr11:119612000-119612200	Enhancers	Brain Anterior Caudate	brain
35	chr11:119612000-119612200	Enhancers	Brain Germinal Matrix	brain
36	chr11:119612000-119612200	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr11:119612000-119612200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr11:119612000-119612200	Bivalent Enhancer	Fetal Thymus	thymus
39	chr11:119612000-119612200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
40	chr11:119612000-119612200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
41	chr11:119612000-119612400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:119612000-119612400	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr11:119612000-119612400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:119612000-119612400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:119612000-119612400	Bivalent Enhancer	Liver	Liver
46	chr11:119612000-119612400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
47	chr11:119612000-119612400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr11:119612000-119612400	Active TSS	Fetal Brain Female	brain
49	chr11:119612000-119612400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
50	chr11:119612000-119612600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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