Variant report

Variant	rs567582019
Chromosome Location	chr6:25451844-25451845
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25448709..25450289-chr6:25450958..25453403,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1850810	chr6:25405576-25462543	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3406200	chr6:25449998-25452546	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3331996	chr6:25450223-25452321	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3435987	chr6:25450623-25451871	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv10289	chr6:25450845-25452339	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv601169	chr6:25451321-25452220	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv601170	chr6:25451410-25452104	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25418800-25462600	Weak transcription	Ovary	ovary
2	chr6:25433400-25472600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:25436200-25481400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:25438200-25472600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:25442000-25455600	Weak transcription	Aorta	Aorta
6	chr6:25443200-25472600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:25446600-25460000	Weak transcription	Fetal Lung	lung
8	chr6:25446800-25454200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:25446800-25454200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:25446800-25493600	Weak transcription	Left Ventricle	heart
11	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
12	chr6:25447400-25452200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:25447400-25473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:25447800-25453800	Weak transcription	Primary T cells from cord blood	blood
15	chr6:25448200-25472600	Weak transcription	Pancreas	Pancrea
16	chr6:25448400-25456600	Weak transcription	Gastric	stomach
17	chr6:25448400-25464400	Weak transcription	Thymus	Thymus
18	chr6:25449000-25462400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:25449000-25463600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:25449200-25454000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:25449400-25515800	Weak transcription	Lung	lung
22	chr6:25449600-25454200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:25449600-25461200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:25449800-25456000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:25450200-25452400	Active TSS	Adipose Nuclei	Adipose
26	chr6:25450200-25456000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:25450400-25455400	Weak transcription	Fetal Brain Female	brain
28	chr6:25450400-25488400	Weak transcription	Fetal Intestine Large	intestine
29	chr6:25450600-25453200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:25450600-25453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:25450600-25456000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:25450800-25452000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:25450800-25452000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:25450800-25452200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:25450800-25454400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:25450800-25454400	Weak transcription	HMEC	breast
37	chr6:25450800-25457800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:25450800-25458400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:25450800-25461600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:25450800-25462600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:25451000-25454200	Weak transcription	NHEK	skin
42	chr6:25451200-25452000	Strong transcription	Fetal Thymus	thymus
43	chr6:25451400-25452000	Active TSS	Brain Hippocampus Middle	brain
44	chr6:25451400-25452600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr6:25451400-25454000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr6:25451400-25454400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr6:25451600-25452200	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:25451600-25452200	Active TSS	Fetal Muscle Leg	muscle
49	chr6:25451600-25452200	Active TSS	Placenta	Placenta
50	chr6:25451600-25452200	Active TSS	Right Atrium	heart

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