Variant report

Variant	rs56760151
Chromosome Location	chr10:112730488-112730489
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112722598..112724957-chr10:112728650..112731118,2	MCF-7	breast:
2	chr10:112728533..112731147-chr10:112731609..112733166,2	K562	blood:

Variant related genes	Relation type
ENSG00000108061	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1035422	chr10:112724159-112764594	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv1036202	chr10:112726834-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv1051595	chr10:112730022-112789048	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	esv2164866	chr10:112730488-112730489	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:112692600-112732400	Weak transcription	Fetal Intestine Large	intestine
3	chr10:112697200-112740200	Weak transcription	Thymus	Thymus
4	chr10:112697200-112745400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
6	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:112707200-112732200	Weak transcription	Pancreas	Pancrea
9	chr10:112707200-112732200	Weak transcription	NHEK	skin
10	chr10:112707200-112732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:112707200-112737600	Weak transcription	Psoas Muscle	Psoas
12	chr10:112707200-112738800	Weak transcription	NH-A	brain
13	chr10:112707200-112755000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
15	chr10:112709000-112760000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:112710000-112736400	Weak transcription	HSMM	muscle
17	chr10:112711800-112735600	Weak transcription	Fetal Intestine Small	intestine
18	chr10:112712200-112732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:112712600-112732400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:112712600-112732400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:112712600-112732400	Weak transcription	Esophagus	oesophagus
22	chr10:112712600-112737200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:112712600-112737600	Weak transcription	HSMMtube	muscle
24	chr10:112712600-112737800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:112712600-112751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:112712600-112755000	Weak transcription	Fetal Thymus	thymus
27	chr10:112712800-112736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:112712800-112738000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:112712800-112751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:112719400-112760800	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:112719600-112732000	Weak transcription	A549	lung
32	chr10:112719800-112735800	Weak transcription	Fetal Stomach	stomach
33	chr10:112719800-112737600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:112719800-112759200	Weak transcription	Fetal Lung	lung
35	chr10:112720800-112737600	Weak transcription	Ovary	ovary
36	chr10:112721600-112737600	Weak transcription	Fetal Heart	heart
37	chr10:112722600-112732400	Weak transcription	Brain Substantia Nigra	brain
38	chr10:112722800-112730600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:112722800-112736600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:112723200-112730800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:112723200-112783000	Weak transcription	Small Intestine	intestine
42	chr10:112723400-112732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:112723600-112732600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr10:112724400-112737000	Weak transcription	Right Atrium	heart
45	chr10:112724400-112737800	Weak transcription	Stomach Mucosa	stomach
46	chr10:112724600-112748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:112724800-112730600	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:112724800-112738200	Weak transcription	Primary T cells from cord blood	blood
49	chr10:112724800-112739600	Weak transcription	Aorta	Aorta
50	chr10:112724800-112746600	Weak transcription	Primary monocytes fromperipheralblood	blood

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