Variant report

Variant	rs56760258
Chromosome Location	chr11:34665099-34665100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16925936	1.00[AMR][1000 genomes]
rs16925992	1.00[AMR][1000 genomes]
rs73446805	1.00[AMR][1000 genomes]
rs73446821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34654400-34666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:34656200-34674400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:34657200-34665600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:34660000-34667400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:34660400-34672000	Weak transcription	Lung	lung
6	chr11:34661200-34666000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:34662400-34665800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:34662400-34666800	Enhancers	HepG2	liver
9	chr11:34662600-34666000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:34662600-34666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:34662800-34666200	Enhancers	Stomach Mucosa	stomach
12	chr11:34663400-34671800	Enhancers	A549	lung
13	chr11:34663600-34665400	Weak transcription	Osteobl	bone
14	chr11:34663600-34666400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:34663800-34665200	Weak transcription	Placenta	Placenta
16	chr11:34664200-34665200	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
17	chr11:34664200-34665400	Enhancers	Pancreas	Pancrea
18	chr11:34664200-34669400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:34664400-34665600	Enhancers	Colonic Mucosa	Colon
20	chr11:34664400-34665600	Active TSS	Fetal Intestine Small	intestine
21	chr11:34664400-34665800	Weak transcription	HMEC	breast
22	chr11:34664400-34666000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:34664400-34666000	Enhancers	Hela-S3	cervix
24	chr11:34664400-34670400	Weak transcription	Fetal Stomach	stomach
25	chr11:34664400-34677000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:34664600-34665200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:34664600-34665600	Flanking Active TSS	Fetal Intestine Large	intestine
28	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:34664800-34665400	Enhancers	K562	blood
30	chr11:34664800-34665600	Enhancers	Esophagus	oesophagus
31	chr11:34664800-34669600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:34665000-34665200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr11:34665000-34665400	Transcr. at gene 5' and 3'	NHEK	skin
34	chr11:34665000-34665600	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr11:34665000-34666000	Weak transcription	Gastric	stomach
36	chr11:34665000-34666400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:34665000-34666600	Weak transcription	Fetal Kidney	kidney
38	chr11:34665000-34666800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:34665000-34667400	Enhancers	HSMMtube	muscle

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