Variant report

Variant	rs56765176
Chromosome Location	chr12:85863177-85863178
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11829641	0.83[AMR][1000 genomes]
rs74112038	0.83[AMR][1000 genomes]
rs74112053	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1053044	chr12:85843030-85942504	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036617	chr12:85855093-86010549	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85862200-85863200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:85862400-85863200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr12:85862400-85863200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:85862400-85863200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr12:85862400-85863200	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr12:85862400-85863200	Active TSS	Monocytes-CD14+_RO01746	blood
7	chr12:85862400-85863400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:85862400-85863400	Active TSS	Thymus	Thymus
9	chr12:85862400-85871600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:85862600-85863200	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr12:85862600-85863200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr12:85862600-85863200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr12:85862600-85863200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:85862600-85863200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr12:85862600-85863200	Active TSS	Primary B cells from cord blood	blood
16	chr12:85862600-85863200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr12:85862600-85863200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr12:85862600-85863200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:85862600-85863200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:85862600-85863200	Enhancers	Liver	Liver
21	chr12:85862600-85863200	Active TSS	Rectal Smooth Muscle	rectum
22	chr12:85862600-85863200	Active TSS	HSMM	muscle
23	chr12:85862600-85863400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:85862600-85863400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr12:85862600-85863400	Flanking Active TSS	NHEK	skin
26	chr12:85862800-85863200	Enhancers	Brain Angular Gyrus	brain
27	chr12:85863000-85863200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:85863000-85863200	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr12:85863000-85863200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:85863000-85863200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr12:85863000-85863200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr12:85863000-85863200	Enhancers	Adipose Nuclei	Adipose
33	chr12:85863000-85863200	Enhancers	Fetal Heart	heart
34	chr12:85863000-85863200	Enhancers	Fetal Lung	lung
35	chr12:85863000-85863200	Enhancers	Gastric	stomach
36	chr12:85863000-85863200	Flanking Active TSS	HMEC	breast
37	chr12:85863000-85863400	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr12:85863000-85863400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr12:85863000-85863400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:85863000-85863400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:85863000-85863400	Enhancers	Esophagus	oesophagus
42	chr12:85863000-85863400	Enhancers	Placenta	Placenta
43	chr12:85863000-85863400	Flanking Active TSS	Fetal Thymus	thymus
44	chr12:85863000-85863400	Enhancers	Stomach Smooth Muscle	stomach
45	chr12:85863000-85863400	Enhancers	GM12878-XiMat	blood
46	chr12:85863000-85863400	Flanking Active TSS	HSMMtube	muscle
47	chr12:85863000-85863600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr12:85863000-85863600	Enhancers	Primary B cells from peripheral blood	blood
49	chr12:85863000-85863800	Enhancers	Hela-S3	cervix
50	chr12:85863000-85864000	Enhancers	Primary hematopoietic stem cells	blood

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