Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:85386878..85388846-chr12:85389082..85390611,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:3)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899377	chr12:85157346-85629241	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1040452	chr12:85179586-85747907	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85383800-85391600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:85387000-85392000	Enhancers	Hela-S3	cervix
3	chr12:85388000-85391000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:85388400-85390200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:85388600-85391000	Enhancers	Thymus	Thymus
6	chr12:85388800-85390200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:85388800-85390200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:85389000-85390000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:85389000-85390000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:85389000-85390000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:85389000-85390000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:85389200-85390200	Enhancers	NH-A	brain
13	chr12:85389200-85391000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:85389600-85390000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:85389600-85390000	Enhancers	Liver	Liver
16	chr12:85389800-85390000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr12:85389800-85390200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr12:85389800-85390600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:85389800-85390600	Enhancers	Fetal Thymus	thymus
20	chr12:85389800-85391000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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