Variant report

Variant	rs56767144
Chromosome Location	chr2:151445206-151445207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:151341275..151343395-chr2:151444356..151446001,2	MCF-7	breast:
2	chr2:151424044..151425573-chr2:151443344..151445218,2	MCF-7	breast:
3	chr2:151340454..151344785-chr2:151441787..151446724,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12052383	0.92[ASN][1000 genomes]
rs16828368	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16828372	0.95[ASN][1000 genomes]
rs2341059	0.81[ASN][1000 genomes]
rs28617484	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4334493	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834415	chr2:151374254-151558649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151440800-151445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:151441400-151445800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:151441800-151445400	Enhancers	NHLF	lung
4	chr2:151442600-151445400	Enhancers	A549	lung
5	chr2:151442600-151446600	Enhancers	Fetal Brain Male	brain
6	chr2:151443400-151445400	Enhancers	Adipose Nuclei	Adipose
7	chr2:151443400-151445400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:151443400-151446400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:151443600-151450400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:151444200-151445400	Enhancers	Fetal Muscle Leg	muscle
11	chr2:151444400-151448000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:151444400-151448200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:151444400-151448200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:151444600-151445400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:151444600-151446000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:151444600-151448000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:151444600-151448200	Weak transcription	HMEC	breast
18	chr2:151444600-151448200	Weak transcription	NHEK	skin
19	chr2:151444600-151452200	Weak transcription	NH-A	brain
20	chr2:151444800-151445400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:151445000-151445600	Enhancers	NHDF-Ad	bronchial
22	chr2:151445000-151448000	Weak transcription	Osteobl	bone
23	chr2:151445000-151448200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:151445200-151445400	Enhancers	Liver	Liver
25	chr2:151445200-151445400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr2:151445200-151446200	Weak transcription	Fetal Brain Female	brain
27	chr2:151445200-151447800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:151445200-151448000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:151445200-151448000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:151445200-151448400	Weak transcription	HSMM	muscle

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