Variant report

Variant	rs56768098
Chromosome Location	chr4:21732451-21732452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10034459	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1034501	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1034502	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16871794	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16871797	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16871838	0.92[AMR][1000 genomes]
rs2044806	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28377254	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28456170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28463803	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28560247	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28578090	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs55820441	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs55906210	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs58744364	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59037882	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6810989	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6814288	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6835916	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6836263	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6836739	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7438259	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7672938	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21730600-21735600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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