Variant report

Variant	rs567749946
Chromosome Location	chr9:100745342-100745343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr9:100744433-100745863	K562	blood:	n/a	chr9:100745636-100745644
2	POLR2A	chr9:100744970-100747731	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr9:100744921-100746497	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:100744910-100745789	A549	lung:	n/a	n/a
5	MAX	chr9:100744877-100746260	SK-N-SH	brain:	n/a	chr9:100745050-100745060 chr9:100745365-100745374 chr9:100745284-100745293 chr9:100745379-100745386 chr9:100745376-100745385
6	POLR2A	chr9:100744838-100747960	HL-60	blood:	n/a	n/a
7	POLR2A	chr9:100742757-100747832	K562	blood:	n/a	n/a
8	TEAD4	chr9:100745116-100745895	K562	blood:	n/a	n/a
9	JUND	chr9:100744958-100745740	MCF-7	breast:	n/a	chr9:100745695-100745704
10	USF1	chr9:100745241-100745681	A549	lung:	n/a	n/a
11	E2F1	chr9:100745214-100747666	Hela-S3	cervix:	n/a	chr9:100745713-100745722 chr9:100747418-100747425 chr9:100746030-100746039 chr9:100747418-100747425 chr9:100746475-100746485 chr9:100746201-100746210 chr9:100747418-100747425 chr9:100745233-100745245 chr9:100745426-100745433
12	ZBTB7A	chr9:100744813-100746153	K562	blood:	n/a	n/a
13	MXI1	chr9:100744895-100748087	GM12878	blood:	n/a	chr9:100747897-100747906
14	TBP	chr9:100745152-100745815	HepG2	liver:	n/a	n/a
15	MYC	chr9:100745033-100745756	K562	blood:	n/a	chr9:100745050-100745060 chr9:100745365-100745374 chr9:100745284-100745293 chr9:100745379-100745386 chr9:100745376-100745385
16	POLR2A	chr9:100744937-100747748	Hela-S3	cervix:	n/a	n/a
17	SPI1	chr9:100745218-100745497	K562	blood:	n/a	n/a
18	GATA3	chr9:100744905-100746299	A549	lung:	n/a	n/a
19	SMC3	chr9:100744905-100745735	Hela-S3	cervix:	n/a	n/a
20	SIN3AK20	chr9:100745169-100745437	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:100744894-100747814	GM18526	blood:	n/a	n/a
22	MYC	chr9:100744695-100748168	MCF10A-Er-Src	breast:	n/a	chr9:100747186-100747195 chr9:100747738-100747749 chr9:100745050-100745060 chr9:100747739-100747748 chr9:100747738-100747749 chr9:100747739-100747749 chr9:100745365-100745374 chr9:100747739-100747748 chr9:100747739-100747749 chr9:100747187-100747194 chr9:100747185-100747196 chr9:100745284-100745293 chr9:100746432-100746442 chr9:100745379-100745386 chr9:100747185-100747196 chr9:100747738-100747748 chr9:100747740-100747747 chr9:100745376-100745385
23	TAF1	chr9:100745186-100746196	H1-neurons	neurons:	n/a	n/a
24	USF1	chr9:100745163-100745581	ECC-1	luminal epithelium:	n/a	n/a
25	E2F6	chr9:100744815-100746295	A549	lung:	n/a	chr9:100745713-100745722 chr9:100746030-100746039 chr9:100746201-100746210 chr9:100745233-100745245 chr9:100745426-100745433
26	YY1	chr9:100745293-100747249	SK-N-SH_RA	brain:	n/a	chr9:100746227-100746236 chr9:100746688-100746699 chr9:100746391-100746405 chr9:100746599-100746609 chr9:100746860-100746868 chr9:100746397-100746411 chr9:100745790-100745801 chr9:100746598-100746614 chr9:100745713-100745722 chr9:100745784-100745793 chr9:100745717-100745731 chr9:100746225-100746247 chr9:100746245-100746259 chr9:100746599-100746609 chr9:100745790-100745799
27	MYC	chr9:100744989-100746185	NB4	blood:	n/a	chr9:100745050-100745060 chr9:100745365-100745374 chr9:100745284-100745293 chr9:100745379-100745386 chr9:100745376-100745385
28	SPI1	chr9:100745082-100745682	HL-60	blood:	n/a	n/a
29	POLR2A	chr9:100744872-100747815	GM12892	blood:	n/a	n/a
30	REST	chr9:100744826-100746130	HL-60	blood:	n/a	chr9:100746036-100746049
31	POLR2A	chr9:100745095-100745808	U87	brain:	n/a	n/a
32	SMARCB1	chr9:100744665-100747777	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr9:100745121-100745621	ECC-1	luminal epithelium:	n/a	n/a
34	NANOG	chr9:100745331-100745628	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr9:100742705-100747942	PBDE	blood:	n/a	n/a
36	SIN3AK20	chr9:100745188-100745792	K562	blood:	n/a	n/a
37	RCOR1	chr9:100745115-100745715	K562	blood:	n/a	n/a
38	POLR2A	chr9:100744949-100747863	NB4	blood:	n/a	n/a
39	RFX5	chr9:100745341-100745621	HepG2	liver:	n/a	n/a
40	CTCF	chr9:100745302-100745800	K562	blood:	n/a	n/a
41	EP300	chr9:100744884-100745897	ECC-1	luminal epithelium:	n/a	chr9:100745603-100745619 chr9:100745716-100745725 chr9:100745694-100745703
42	ELK1	chr9:100745068-100745918	K562	blood:	n/a	n/a
43	POLR2A	chr9:100744717-100747928	GM12892	blood:	n/a	n/a
44	ETS1	chr9:100745187-100745747	GM12878	blood:	n/a	chr9:100745398-100745411 chr9:100745400-100745411 chr9:100745610-100745623 chr9:100745399-100745413 chr9:100745400-100745407
45	WRNIP1	chr9:100745329-100745367	GM12878	blood:	n/a	n/a
46	PAX5	chr9:100745264-100745721	GM12892	blood:	n/a	chr9:100745640-100745659 chr9:100745674-100745692
47	POLR2A	chr9:100745192-100745656	HepG2	liver:	n/a	n/a
48	MYBL2	chr9:100744979-100745827	HepG2	liver:	n/a	n/a
49	CHD2	chr9:100744895-100747790	Hela-S3	cervix:	n/a	chr9:100747607-100747617 chr9:100747760-100747770 chr9:100745426-100745433 chr9:100746427-100746437
50	MXI1	chr9:100742672-100749207	SK-N-SH	brain:	n/a	chr9:100742948-100742963 chr9:100747897-100747906

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100674231..100678302-chr9:100744904..100747134,4	MCF-7	breast:
3	chr9:100744471..100747062-chr9:100817673..100820807,4	MCF-7	breast:
4	chr12:7050893..7053745-chr9:100745089..100746721,2	MCF-7	breast:
5	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:
6	chr9:100745095..100746036-chr9:125667296..125667841,2	Hela-S3	cervix:
7	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
8	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
9	chr14:34417944..34420786-chr9:100744880..100747851,2	MCF-7	breast:
10	chr9:100685626..100686321-chr9:100744853..100745599,2	MCF-7	breast:
11	chr9:100393798..100396909-chr9:100744219..100748139,5	MCF-7	breast:
12	chr9:100744956..100747904-chr9:100835369..100837055,2	K562	blood:
13	chr9:100395301..100398247-chr9:100745097..100747092,2	MCF-7	breast:
14	chr9:100744956..100747210-chr9:100835059..100837055,2	K562	blood:
15	chr9:100745249..100747545-chr9:100817221..100819862,3	K562	blood:
16	chr6:34204437..34204948-chr9:100745047..100745884,2	HCT-116	colon:
17	chr9:100437101..100439123-chr9:100743935..100746928,2	K562	blood:
18	chr9:100744716..100748585-chr9:100832900..100838437,10	MCF-7	breast:
19	chr17:66286131..66288526-chr9:100744742..100747480,2	MCF-7	breast:
20	chr9:100705963..100708319-chr9:100744697..100747203,2	MCF-7	breast:
21	chr9:100744384..100747791-chr9:101014978..101019057,4	MCF-7	breast:
22	chr9:100395236..100396868-chr9:100743200..100745382,2	K562	blood:
23	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
24	chr9:100461133..100463354-chr9:100744707..100746870,2	MCF-7	breast:
25	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:
26	chr9:100394431..100399065-chr9:100743200..100747046,6	K562	blood:
27	chr9:100743877..100746388-chr9:123637926..123639429,2	K562	blood:

Variant related genes	Relation type
ANP32B	TF binding region
ENSG00000137309	Chromatin interaction
ENSG00000201830	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000136936	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000266608	Chromatin interaction
ENSG00000214417	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000119403	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000231521	Chromatin interaction
ENSG00000056586	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000238923	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000108932	Chromatin interaction
ENSG00000141337	Chromatin interaction
ENSG00000136925	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3426844	chr9:100744156-100747104	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
3	esv3525787	chr9:100744481-100748729	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
4	esv3525788	chr9:100744481-100748729	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
5	esv3355582	chr9:100744831-100749229	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	esv3441780	chr9:100745156-100748104	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100740600-100745600	Enhancers	Fetal Brain Male	brain
2	chr9:100744000-100747800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr9:100744200-100745400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:100744200-100747800	Active TSS	Fetal Brain Female	brain
5	chr9:100744400-100745400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:100744400-100745400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:100744400-100745400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:100744400-100745400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr9:100744400-100745400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:100744400-100747800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr9:100744600-100745400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr9:100744600-100745400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr9:100744600-100745400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr9:100744600-100745400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr9:100744600-100745400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:100744600-100745400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:100744600-100745400	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr9:100744600-100745400	Flanking Active TSS	Colonic Mucosa	Colon
19	chr9:100744600-100745400	Flanking Active TSS	Fetal Muscle Trunk	muscle
20	chr9:100744600-100745400	Flanking Active TSS	HMEC	breast
21	chr9:100744600-100745400	Flanking Active TSS	HUVEC	blood vessel
22	chr9:100744600-100745400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr9:100744600-100745600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:100744600-100747400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:100744600-100747400	Active TSS	Psoas Muscle	Psoas
26	chr9:100744600-100747400	Active TSS	Osteobl	bone
27	chr9:100744600-100747600	Active TSS	A549	lung
28	chr9:100744600-100747600	Active TSS	HSMMtube	muscle
29	chr9:100744600-100747600	Active TSS	NHDF-Ad	bronchial
30	chr9:100744600-100747800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:100744600-100747800	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr9:100744600-100747800	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr9:100744600-100748000	Active TSS	Brain Angular Gyrus	brain
34	chr9:100744600-100748000	Active TSS	NHLF	lung
35	chr9:100744600-100748600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:100744800-100745400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:100744800-100745400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:100744800-100745400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:100744800-100745400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr9:100744800-100745400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr9:100744800-100745400	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr9:100744800-100745400	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr9:100744800-100745400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr9:100744800-100745400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr9:100744800-100745400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr9:100744800-100745400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:100744800-100745400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:100744800-100745400	Flanking Active TSS	Placenta	Placenta
49	chr9:100744800-100745400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
50	chr9:100744800-100745400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links