Variant report

Variant	rs567761302
Chromosome Location	chr15:34330481-34330482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34330030..34332710-chr15:35259474..35262090,2	MCF-7	breast:
2	chr15:34330374..34330923-chr15:34659512..34660213,2	K562	blood:
3	chr15:34320977..34323643-chr15:34328767..34331333,2	MCF-7	breast:
4	chr15:34329770..34332450-chr15:34500868..34502911,3	K562	blood:
5	chr12:54388393..54389358-chr15:34330438..34331617,3	Hela-S3	cervix:
6	chr1:231003799..231004442-chr15:34330464..34331002,2	Hela-S3	cervix:
7	chr15:34327076..34328752-chr15:34329743..34331266,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197757	Chromatin interaction
ENSG00000180806	Chromatin interaction
ENSG00000021776	Chromatin interaction
ENSG00000134152	Chromatin interaction
ENSG00000119280	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3368275	chr15:34330085-34332358	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34329400-34331600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr15:34329600-34331600	Active TSS	GM12878-XiMat	blood
3	chr15:34329800-34330600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr15:34329800-34330800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:34329800-34331600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:34329800-34331600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr15:34330000-34330600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:34330000-34330600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr15:34330000-34330600	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr15:34330000-34330600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr15:34330000-34330600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr15:34330000-34330600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr15:34330000-34330600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:34330000-34330600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr15:34330000-34330600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr15:34330000-34330600	Flanking Active TSS	Liver	Liver
17	chr15:34330000-34330600	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr15:34330000-34330600	Active TSS	Right Atrium	heart
19	chr15:34330000-34330600	Flanking Active TSS	HUVEC	blood vessel
20	chr15:34330000-34330600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr15:34330000-34330800	Active TSS	Fetal Brain Male	brain
22	chr15:34330000-34331400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:34330000-34331600	Active TSS	H1 Cell Line	embryonic stem cell
24	chr15:34330000-34331600	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr15:34330000-34331600	Active TSS	Primary T cells fromperipheralblood	blood
26	chr15:34330000-34331600	Active TSS	Brain Germinal Matrix	brain
27	chr15:34330000-34331600	Active TSS	Fetal Intestine Large	intestine
28	chr15:34330000-34331600	Active TSS	Fetal Thymus	thymus
29	chr15:34330000-34331600	Active TSS	NH-A	brain
30	chr15:34330000-34331600	Active TSS	NHEK	skin
31	chr15:34330000-34331600	Active TSS	Osteobl	bone
32	chr15:34330000-34331800	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr15:34330000-34331800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr15:34330000-34331800	Active TSS	H9 Cell Line	embryonic stem cell
35	chr15:34330000-34331800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:34330000-34331800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:34330000-34331800	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr15:34330000-34331800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:34330000-34331800	Active TSS	Brain Cingulate Gyrus	brain
40	chr15:34330000-34331800	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr15:34330000-34331800	Active TSS	Brain Substantia Nigra	brain
42	chr15:34330000-34331800	Active TSS	Fetal Brain Female	brain
43	chr15:34330000-34331800	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr15:34330000-34331800	Active TSS	Thymus	Thymus
45	chr15:34330000-34332000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:34330000-34332000	Active TSS	Colonic Mucosa	Colon
47	chr15:34330000-34332000	Active TSS	Fetal Muscle Leg	muscle
48	chr15:34330000-34332000	Active TSS	Psoas Muscle	Psoas
49	chr15:34330000-34332000	Active TSS	Right Ventricle	heart
50	chr15:34330000-34332200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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