Variant report

Variant	rs56776915
Chromosome Location	chr6:73891382-73891383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12662682	0.92[AFR][1000 genomes]
rs16883468	0.92[AFR][1000 genomes]
rs16883471	0.92[AFR][1000 genomes]
rs2350373	1.00[AMR][1000 genomes]
rs2882407	1.00[AMR][1000 genomes]
rs3799281	0.92[AFR][1000 genomes]
rs3799282	0.92[AFR][1000 genomes]
rs3799283	0.92[AFR][1000 genomes]
rs3799284	0.92[AFR][1000 genomes]
rs3799285	0.92[AFR][1000 genomes]
rs56941368	0.92[AFR][1000 genomes]
rs59375312	1.00[AMR][1000 genomes]
rs59860080	1.00[AFR][1000 genomes]
rs60111089	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73869000-73904200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73884800-73903600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73887600-73903600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73890200-73891400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:73890800-73904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73890800-73904200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73890800-73904400	Weak transcription	Aorta	Aorta
8	chr6:73891000-73891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:73891000-73891400	Enhancers	Brain Substantia Nigra	brain
10	chr6:73891000-73892000	Enhancers	GM12878-XiMat	blood
11	chr6:73891000-73892600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:73891000-73892800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:73891000-73897400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:73891000-73900600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:73891000-73901000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:73891000-73903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:73891000-73909600	Weak transcription	HSMMtube	muscle
18	chr6:73891200-73904400	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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