Variant report

Variant	rs567775507
Chromosome Location	chr4:3345206-3345207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3345074..3347959-chr4:3442893..3444446,2	MCF-7	breast:
2	chr4:3344329..3346374-chr4:3348112..3350683,2	K562	blood:
3	chr4:3344785..3347772-chr4:3481036..3482952,2	MCF-7	breast:
4	chr4:3343221..3349626-chr4:3462156..3471133,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109758	Chromatin interaction
ENSG00000175920	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv998290	chr4:3176454-3355758	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv878456	chr4:3215835-3467519	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv593446	chr4:3342137-3346617	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv593449	chr4:3342954-3346617	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3341831	chr4:3344704-3347502	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3301200-3350000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:3314400-3348200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:3320400-3351800	Weak transcription	Aorta	Aorta
4	chr4:3321000-3347000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:3325600-3348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:3326400-3348000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:3334000-3345800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:3334000-3370600	Weak transcription	Right Atrium	heart
9	chr4:3339200-3353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:3342000-3348200	Weak transcription	Brain Angular Gyrus	brain
11	chr4:3342200-3348000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:3342600-3348000	Weak transcription	Liver	Liver
13	chr4:3342600-3350200	Weak transcription	Pancreas	Pancrea
14	chr4:3342800-3348000	Weak transcription	Left Ventricle	heart
15	chr4:3342800-3348000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:3342800-3355400	Weak transcription	Esophagus	oesophagus
17	chr4:3343800-3348000	Weak transcription	Placenta	Placenta
18	chr4:3343800-3350200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:3344000-3345400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:3344000-3345800	Weak transcription	Fetal Brain Male	brain
21	chr4:3344000-3347800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:3344000-3347800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:3344000-3352400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:3344000-3354600	Weak transcription	Right Ventricle	heart
25	chr4:3344200-3348000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:3344200-3348000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:3344200-3348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:3344400-3345800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:3344400-3346600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:3344400-3346800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:3344400-3347600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:3344400-3347800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:3344400-3348000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:3344400-3348000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:3344400-3348000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:3344400-3348000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:3344400-3348000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr4:3344400-3349600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:3344400-3349800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:3344400-3350200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:3344400-3350200	Weak transcription	Ovary	ovary
42	chr4:3344400-3350200	Weak transcription	Spleen	Spleen
43	chr4:3344400-3356400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:3344400-3362400	Weak transcription	HSMMtube	muscle
45	chr4:3344400-3367600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:3344600-3345400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr4:3344600-3345800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:3344600-3346400	Strong transcription	Fetal Muscle Leg	muscle
49	chr4:3344600-3346800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:3344600-3346800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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