Variant report

Variant	rs56781384
Chromosome Location	chr10:44885803-44885804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17878725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17883369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17884600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44883800-44886200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44884200-44886800	Enhancers	Liver	Liver
3	chr10:44884800-44886400	Enhancers	Fetal Muscle Trunk	muscle
4	chr10:44885000-44886000	Weak transcription	Adipose Nuclei	Adipose
5	chr10:44885000-44886000	Weak transcription	Spleen	Spleen
6	chr10:44885000-44886000	Weak transcription	NHDF-Ad	bronchial
7	chr10:44885000-44886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44885000-44886200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:44885200-44886200	Weak transcription	Pancreas	Pancrea
10	chr10:44885600-44886200	Enhancers	Fetal Lung	lung
11	chr10:44885600-44886400	Enhancers	Lung	lung
12	chr10:44885800-44886600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44885800-44886600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:44885800-44886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:44885800-44886600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:44885800-44886600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:44885800-44886600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:44885800-44886600	Enhancers	Osteobl	bone
19	chr10:44885800-44886800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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