Variant report

Variant	rs567871861
Chromosome Location	chr12:12059218-12059219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:12056694..12059278-chr12:12764602..12766509,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111269	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832331	chr12:11925095-12114451	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12048200-12059400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:12049000-12059800	Enhancers	Fetal Thymus	thymus
3	chr12:12058600-12059600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr12:12058600-12059600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr12:12058600-12059800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:12058600-12059800	Enhancers	Thymus	Thymus
7	chr12:12058600-12060200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:12058600-12060200	Enhancers	Primary T cells from cord blood	blood
9	chr12:12058600-12060200	ZNF genes & repeats	GM12878-XiMat	blood
10	chr12:12058800-12059600	Enhancers	HSMM	muscle
11	chr12:12058800-12059800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:12058800-12060000	Enhancers	Dnd41	blood
13	chr12:12059000-12059400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr12:12059000-12059400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr12:12059000-12059400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr12:12059000-12059400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr12:12059000-12059400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr12:12059000-12059800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr12:12059000-12059800	Enhancers	Osteobl	bone
20	chr12:12059000-12060200	Enhancers	NH-A	brain
21	chr12:12059200-12059400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr12:12059200-12059600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:12059200-12059600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr12:12059200-12059800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr12:12059200-12059800	Enhancers	NHLF	lung
26	chr12:12059200-12060200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links