Variant report

Variant	rs56793208
Chromosome Location	chr6:12751231-12751232
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1412747	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1412748	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs475543	0.83[ASN][1000 genomes]
rs560810	0.81[ASN][1000 genomes]
rs581046	0.83[ASN][1000 genomes]
rs6458438	0.91[ASN][1000 genomes]
rs6458439	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3361165	chr6:12748791-12751339	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
4	esv3432117	chr6:12748916-12751314	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12748800-12752600	Active TSS	Fetal Brain Female	brain
2	chr6:12750400-12751600	Flanking Active TSS	Fetal Brain Male	brain
3	chr6:12750600-12751600	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr6:12751000-12751600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr6:12751000-12752200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:12751200-12751400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr6:12751200-12751400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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