Variant report

Variant	rs567939030
Chromosome Location	chr16:31731674-31731675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31730337..31731972-chr16:31892630..31894181,2	MCF-7	breast:
2	chr16:31731395..31734226-chr16:31884146..31887105,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185947	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
2	esv3344221	chr16:31526786-31821640	Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	esv3323903	chr16:31526802-31821640	Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv3504445	chr16:31526873-31821580	Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	esv3504446	chr16:31526873-31821580	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	esv3366795	chr16:31534951-31827424	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
7	nsv833195	chr16:31576112-31763222	ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv905761	chr16:31730525-31812442	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31725400-31742000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:31725600-31735800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:31725800-31753400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:31726000-31742400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr16:31726000-31747400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr16:31726200-31734200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:31726200-31736600	Weak transcription	Aorta	Aorta
8	chr16:31726200-31736800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr16:31726200-31742600	Weak transcription	Ovary	ovary
10	chr16:31726200-31745600	Weak transcription	Colonic Mucosa	Colon
11	chr16:31726400-31736000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr16:31726400-31736600	Weak transcription	Small Intestine	intestine
13	chr16:31726400-31750000	Weak transcription	HUVEC	blood vessel
14	chr16:31726400-31750800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr16:31726600-31734400	Weak transcription	Fetal Kidney	kidney
16	chr16:31726600-31734600	Weak transcription	Fetal Brain Male	brain
17	chr16:31726600-31734800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr16:31726600-31734800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:31726600-31736000	Weak transcription	Placenta	Placenta
20	chr16:31726600-31736200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr16:31726600-31740000	Weak transcription	NHDF-Ad	bronchial
22	chr16:31726600-31741000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:31726600-31743200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr16:31726600-31744000	Weak transcription	K562	blood
25	chr16:31726600-31748600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr16:31726800-31736800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr16:31727000-31732200	ZNF genes & repeats	GM12878-XiMat	blood
28	chr16:31727000-31745000	Weak transcription	HMEC	breast
29	chr16:31727200-31734000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr16:31727200-31736200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr16:31727200-31758800	Weak transcription	Fetal Thymus	thymus
32	chr16:31727200-31760000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr16:31727400-31733600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr16:31727400-31736000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr16:31727400-31736600	Weak transcription	Brain Hippocampus Middle	brain
36	chr16:31727600-31733800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr16:31727600-31734400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr16:31727600-31736800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr16:31727600-31741000	Weak transcription	Fetal Heart	heart
40	chr16:31727600-31743400	Weak transcription	NHEK	skin
41	chr16:31727600-31758400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr16:31727800-31733200	Weak transcription	Stomach Mucosa	stomach
43	chr16:31727800-31733800	Weak transcription	Osteobl	bone
44	chr16:31727800-31734000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr16:31727800-31734600	Weak transcription	HepG2	liver
46	chr16:31727800-31736600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr16:31727800-31741800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr16:31727800-31742400	Weak transcription	Gastric	stomach
49	chr16:31727800-31742400	Weak transcription	HSMM	muscle
50	chr16:31727800-31742600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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