Variant report

Variant	rs567940753
Chromosome Location	chr10:23633610-23633611
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:23633122-23634042	H1-neurons	neurons:	n/a	n/a
2	CTBP2	chr10:23633165-23633740	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr10:23633179-23633744	U87	brain:	n/a	n/a
4	CTCF	chr10:23633460-23633610	HCPEpiC	choroid plexus:	n/a	n/a
5	MAX	chr10:23633104-23633892	SK-N-SH	brain:	n/a	n/a
6	MAX	chr10:23632708-23633724	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
7	MXI1	chr10:23633216-23633857	IMR90	lung:	n/a	n/a
8	POLR2A	chr10:23633157-23633909	SK-N-SH	brain:	n/a	n/a
9	ZNF263	chr10:23632432-23633834	HEK293-T-REx	kidney:	n/a	n/a
10	MAX	chr10:23633171-23633650	A549	lung:	n/a	n/a
11	POLR2A	chr10:23633173-23633750	U87	brain:	n/a	n/a
12	MAX	chr10:23633139-23633767	H1-hESC	embryonic stem cell:	n/a	n/a
13	JUND	chr10:23633566-23633661	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr10:23633144-23633831	H1-neurons	neurons:	n/a	n/a
15	POLR2A	chr10:23633526-23633673	MCF-7	breast:	n/a	n/a
16	POLR2A	chr10:23633174-23633642	U87	brain:	n/a	n/a
17	MAX	chr10:23632824-23633653	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
18	POLR2A	chr10:23632771-23633765	H1-neurons	neurons:	n/a	n/a
19	SIN3A	chr10:23632621-23633849	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAX	chr10:23633114-23633870	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr10:23633262-23633807	SK-N-SH	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OTUD1-1	chr10:23633353-23634110	ENSG00000224215.1

No data

Variant related genes	Relation type
C10orf67	TF binding region
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3321964	chr10:23632396-23633894	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23632000-23634000	Active TSS	Brain Hippocampus Middle	brain
2	chr10:23632200-23633800	Weak transcription	Hela-S3	cervix
3	chr10:23632200-23634000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:23632200-23634000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:23632400-23633800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:23632400-23633800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:23632400-23633800	Active TSS	Fetal Brain Female	brain
8	chr10:23632400-23634000	Active TSS	Brain Cingulate Gyrus	brain
9	chr10:23632400-23634000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr10:23632600-23633800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
11	chr10:23632600-23633800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr10:23632600-23633800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:23632600-23633800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:23632600-23633800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:23632600-23633800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:23632600-23633800	Active TSS	Right Atrium	heart
17	chr10:23632600-23633800	Active TSS	Right Ventricle	heart
18	chr10:23632600-23633800	Bivalent/Poised TSS	Thymus	Thymus
19	chr10:23632600-23634000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr10:23632600-23634000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chr10:23632600-23634000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr10:23632600-23634000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr10:23632600-23634000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:23632600-23634000	Active TSS	Brain Anterior Caudate	brain
25	chr10:23632600-23634000	Active TSS	Fetal Kidney	kidney
26	chr10:23632600-23634600	Active TSS	Brain Substantia Nigra	brain
27	chr10:23632800-23633800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
28	chr10:23632800-23633800	Active TSS	Psoas Muscle	Psoas
29	chr10:23632800-23633800	Bivalent/Poised TSS	Stomach Mucosa	stomach
30	chr10:23632800-23634000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr10:23632800-23634000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr10:23632800-23634000	Bivalent/Poised TSS	Fetal Lung	lung
33	chr10:23632800-23634000	Bivalent/Poised TSS	A549	lung
34	chr10:23633000-23633800	Active TSS	Aorta	Aorta
35	chr10:23633200-23633800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
37	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
38	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
39	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
40	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
44	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
45	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
46	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr10:23633200-23633800	Bivalent Enhancer	Small Intestine	intestine
48	chr10:23633200-23633800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
49	chr10:23633200-23633800	Active TSS	NHDF-Ad	bronchial
50	chr10:23633200-23634000	Active TSS	Primary T helper naive cells from peripheral blood	blood

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