Variant report

Variant	rs56794580
Chromosome Location	chr1:155920126-155920127
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155909425..155917901-chr1:155919093..155927049,14	K562	blood:
2	chr1:155902642..155904598-chr1:155919290..155920814,2	K562	blood:

Variant related genes	Relation type
ENSG00000132680	Chromatin interaction
ENSG00000173080	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58826817	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155905000-155945600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:155911200-155940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155914800-155921800	Weak transcription	Fetal Heart	heart
4	chr1:155914800-155929600	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr1:155914800-155929800	Strong transcription	Fetal Stomach	stomach
6	chr1:155914800-155930200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:155914800-155931600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:155915200-155921600	Weak transcription	Fetal Brain Male	brain
9	chr1:155915200-155927400	Strong transcription	Brain Anterior Caudate	brain
10	chr1:155915200-155930600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:155915200-155936800	Strong transcription	Fetal Brain Female	brain
12	chr1:155915200-155937000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:155915800-155921400	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:155915800-155921600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:155915800-155925400	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr1:155915800-155929600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:155915800-155929600	Strong transcription	HMEC	breast
18	chr1:155915800-155929800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:155915800-155929800	Strong transcription	HSMMtube	muscle
20	chr1:155915800-155930000	Strong transcription	Left Ventricle	heart
21	chr1:155915800-155930400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:155915800-155930400	Strong transcription	Osteobl	bone
23	chr1:155915800-155930600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:155915800-155931600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:155915800-155935200	Strong transcription	Brain Germinal Matrix	brain
26	chr1:155915800-155936600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:155916000-155921800	Strong transcription	Esophagus	oesophagus
28	chr1:155916000-155925400	Strong transcription	Gastric	stomach
29	chr1:155916000-155925400	Strong transcription	NHEK	skin
30	chr1:155916000-155926000	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr1:155916000-155930600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:155916000-155931400	Strong transcription	HUVEC	blood vessel
33	chr1:155916000-155937000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:155916200-155921600	Weak transcription	Stomach Mucosa	stomach
35	chr1:155916200-155925400	Strong transcription	K562	blood
36	chr1:155916200-155926000	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr1:155916200-155929800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:155916200-155929800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr1:155916200-155930200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:155916200-155931600	Weak transcription	Right Atrium	heart
41	chr1:155916200-155932400	Strong transcription	Colon Smooth Muscle	Colon
42	chr1:155916200-155937000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr1:155916400-155921800	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr1:155916400-155926000	Strong transcription	Fetal Lung	lung
45	chr1:155916400-155929000	Strong transcription	Placenta	Placenta
46	chr1:155916400-155929400	Strong transcription	Brain Cingulate Gyrus	brain
47	chr1:155916400-155930400	Strong transcription	Adipose Nuclei	Adipose
48	chr1:155916400-155930600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:155916400-155931800	Strong transcription	Lung	lung
50	chr1:155916400-155936200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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