Variant report

Variant	rs567961475
Chromosome Location	chr6:28778429-28778430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28653637..28654159-chr6:28777644..28778612,2	MCF-7	breast:
3	chr6:28746343..28748629-chr6:28776362..28778668,2	K562	blood:
4	chr6:28778307..28780155-chr6:28804697..28807128,2	K562	blood:
5	chr6:28692413..28694711-chr6:28778373..28780345,2	K562	blood:
6	chr6:28687938..28689790-chr6:28777726..28779382,2	K562	blood:
7	chr6:28771451..28773263-chr6:28777101..28779175,2	K562	blood:
8	chr6:28777118..28779341-chr6:28889220..28890745,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000204713	Chromatin interaction
ENSG00000225173	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv970724	chr6:28778144-28784760	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28775600-28778600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28775600-28778600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:28776800-28779200	Weak transcription	Hela-S3	cervix
4	chr6:28777000-28778600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:28777000-28779000	Active TSS	A549	lung
6	chr6:28777400-28778600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:28777400-28778600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr6:28777600-28778600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:28777600-28778600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
10	chr6:28777600-28778800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr6:28777600-28778800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr6:28777600-28779400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:28777800-28778600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:28777800-28778600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:28777800-28778600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr6:28777800-28778600	Bivalent/Poised TSS	NHLF	lung
17	chr6:28777800-28778800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
18	chr6:28777800-28778800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:28777800-28778800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:28777800-28778800	Flanking Bivalent TSS/Enh	HepG2	liver
21	chr6:28777800-28778800	Bivalent/Poised TSS	HSMMtube	muscle
22	chr6:28777800-28778800	Flanking Bivalent TSS/Enh	NHEK	skin
23	chr6:28777800-28778800	Flanking Bivalent TSS/Enh	Osteobl	bone
24	chr6:28777800-28779000	Flanking Active TSS	HMEC	breast
25	chr6:28778000-28778600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr6:28778000-28778600	Bivalent/Poised TSS	NHDF-Ad	bronchial
27	chr6:28778000-28778800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
28	chr6:28778000-28778800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
29	chr6:28778000-28778800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:28778000-28778800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
31	chr6:28778000-28778800	Bivalent Enhancer	Esophagus	oesophagus
32	chr6:28778000-28778800	Enhancers	Pancreas	Pancrea
33	chr6:28778000-28779800	Flanking Active TSS	K562	blood
34	chr6:28778200-28778600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:28778200-28778600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:28778200-28778800	Bivalent Enhancer	Fetal Stomach	stomach
37	chr6:28778200-28778800	ZNF genes & repeats	Right Atrium	heart
38	chr6:28778200-28778800	Bivalent/Poised TSS	GM12878-XiMat	blood
39	chr6:28778200-28781600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:28778400-28778600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:28778400-28778600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:28778400-28778600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:28778400-28778600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:28778400-28778600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
45	chr6:28778400-28778600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:28778400-28778600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:28778400-28778600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:28778400-28778600	Bivalent Enhancer	HSMM	muscle
49	chr6:28778400-28778600	Bivalent Enhancer	NH-A	brain
50	chr6:28778400-28778800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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