Variant report
| Variant | rs567981216 |
|---|---|
| Chromosome Location | chr4:28512085-28512086 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010133 | chr4:28273244-28642942 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014938 | chr4:28277683-28642942 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv12300 | chr4:28511836-28512931 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | esv3523834 | chr4:28511856-28513344 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3523835 | chr4:28511874-28513398 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3523836 | chr4:28511887-28513301 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 7 | esv3464966 | chr4:28511898-28513300 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 8 | esv3464968 | chr4:28511900-28513285 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 9 | esv3464967 | chr4:28511911-28513252 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 10 | esv3464965 | chr4:28511928-28513285 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 11 | esv3464969 | chr4:28511968-28513207 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 12 | esv3523833 | chr4:28511978-28513205 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 13 | esv3523837 | chr4:28511978-28513205 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 14 | esv3464970 | chr4:28511982-28513203 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:28500000-28520400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
