Variant report

Variant	rs567982054
Chromosome Location	chr14:68701870-68701871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68688076..68702777-chr14:69257523..69263819,21	MCF-7	breast:
2	chr14:68700078..68701970-chr14:68703317..68705576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3346965	chr14:68701449-68703447	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68676800-68703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68685000-68705200	Weak transcription	K562	blood
3	chr14:68690800-68712800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:68691000-68705800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:68693000-68705800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:68696600-68702000	Enhancers	Stomach Mucosa	stomach
7	chr14:68697000-68702000	Enhancers	Fetal Kidney	kidney
8	chr14:68697000-68702000	Enhancers	Fetal Lung	lung
9	chr14:68697000-68702000	Enhancers	NH-A	brain
10	chr14:68697400-68702000	Enhancers	Fetal Intestine Large	intestine
11	chr14:68697400-68711400	Weak transcription	Spleen	Spleen
12	chr14:68697400-68712400	Weak transcription	Aorta	Aorta
13	chr14:68697600-68714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:68697800-68702000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:68698400-68703000	Weak transcription	Ovary	ovary
16	chr14:68698800-68703000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:68699000-68703600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:68699200-68703400	Weak transcription	Fetal Thymus	thymus
19	chr14:68699200-68708600	Weak transcription	Lung	lung
20	chr14:68699400-68703000	Weak transcription	Colonic Mucosa	Colon
21	chr14:68699600-68705200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:68699800-68703000	Weak transcription	HepG2	liver
23	chr14:68699800-68703400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:68699800-68708400	Weak transcription	Psoas Muscle	Psoas
25	chr14:68700000-68702800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:68700000-68703000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:68700000-68703200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:68700000-68706800	Weak transcription	Brain Anterior Caudate	brain
29	chr14:68700000-68707600	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:68700200-68703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:68700400-68703400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr14:68700400-68703600	Weak transcription	NHDF-Ad	bronchial
33	chr14:68700400-68705400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:68700400-68705800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:68700400-68706600	Weak transcription	HUVEC	blood vessel
36	chr14:68700400-68710200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr14:68700600-68703000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr14:68700600-68703200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:68700800-68702400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:68700800-68703000	Weak transcription	GM12878-XiMat	blood
41	chr14:68700800-68703400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr14:68700800-68705400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:68700800-68706400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr14:68700800-68708600	Weak transcription	HSMMtube	muscle
45	chr14:68701000-68702000	Enhancers	A549	lung
46	chr14:68701000-68702800	Weak transcription	Liver	Liver
47	chr14:68701000-68703000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:68701000-68703000	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:68701200-68702800	Weak transcription	Fetal Intestine Small	intestine
50	chr14:68701200-68703400	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links