Variant report

Variant	rs56799770
Chromosome Location	chr14:46102935-46102936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10134999	0.96[EUR][1000 genomes]
rs10145843	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1686235	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116250	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116252	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116269	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17116271	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116287	0.98[EUR][1000 genomes]
rs17116303	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17116352	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116364	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17116377	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17116385	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1750087	0.91[EUR][1000 genomes]
rs1906787	0.98[EUR][1000 genomes]
rs1906789	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1906799	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1906809	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250214	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2297998	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28522365	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28835981	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28872244	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4624080	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56922080	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57434363	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57969791	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59944893	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61019014	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61071649	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73343512	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73343514	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73343516	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73343519	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73345722	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73345726	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73359414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73359417	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73359422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73359438	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73359460	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8005289	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs946994	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs946995	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530814	chr14:45604432-46198418	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1042989	chr14:45774194-46489107	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv901847	chr14:45797782-46607899	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2422441	chr14:45848850-46325684	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1035463	chr14:45940562-46201777	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv542083	chr14:45940562-46201777	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv976289	chr14:45973774-46282154	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1044871	chr14:46007760-46432325	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv456282	chr14:46024675-46458696	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv564729	chr14:46024675-46458696	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2757568	chr14:46050874-46120738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2759988	chr14:46050874-46120738	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:46101800-46103600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:46102400-46103400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:46102400-46103400	Flanking Active TSS	NHEK	skin
4	chr14:46102600-46103000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:46102600-46103200	Flanking Active TSS	HMEC	breast
6	chr14:46102600-46103600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:46102600-46103600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:46102800-46103200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:46102800-46105200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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