Variant report

Variant	rs568039474
Chromosome Location	chr4:120898596-120898597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120883400-120903400	Weak transcription	Left Ventricle	heart
2	chr4:120897000-120900600	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:120897600-120898800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:120897600-120902000	Enhancers	Colon Smooth Muscle	Colon
5	chr4:120897800-120898600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:120898000-120898800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:120898000-120898800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:120898200-120898600	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr4:120898200-120898800	Enhancers	Fetal Kidney	kidney
10	chr4:120898200-120899000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:120898200-120899000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:120898200-120899400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:120898400-120898800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:120898400-120898800	Enhancers	Fetal Stomach	stomach
15	chr4:120898400-120899000	Enhancers	Fetal Muscle Leg	muscle
16	chr4:120898400-120899000	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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