Variant report

Variant	rs56805160
Chromosome Location	chr5:115939304-115939305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59431456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115936800-115940600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:115937000-115939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:115937000-115940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:115937000-115941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:115937800-115939800	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:115938200-115939400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:115938600-115940600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:115938800-115941200	Weak transcription	Aorta	Aorta
10	chr5:115939000-115943000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:115939200-115940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:115939200-115941000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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