Variant report

Variant	rs568053813
Chromosome Location	chr7:66843538-66843539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66842963..66843775-chr7:69626464..69627151,2	K562	blood:
2	chr7:66842895..66843844-chr7:69506111..69506611,2	K562	blood:
3	chr7:66842914..66843798-chr7:69396772..69397448,2	MCF-7	breast:
4	chr7:66843189..66843805-chr7:66948880..66949474,3	MCF-7	breast:
5	chr7:66843281..66844030-chr7:69396720..69397270,2	MCF-7	breast:
6	chr7:66843114..66843901-chr7:67089975..67090726,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3374929	chr7:66843317-66848115	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66840800-66843600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:66842800-66843600	Enhancers	Fetal Brain Female	brain
3	chr7:66842800-66844000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:66842800-66844000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr7:66842800-66844200	Enhancers	Fetal Muscle Leg	muscle
6	chr7:66843000-66843600	Enhancers	Fetal Brain Male	brain
7	chr7:66843000-66843800	Enhancers	Brain Hippocampus Middle	brain
8	chr7:66843000-66843800	Enhancers	Spleen	Spleen
9	chr7:66843000-66844000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:66843000-66844000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:66843000-66844000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:66843000-66847200	Enhancers	Fetal Stomach	stomach
13	chr7:66843200-66843600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:66843200-66843600	Enhancers	Pancreas	Pancrea
15	chr7:66843200-66843600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr7:66843200-66843800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:66843200-66843800	Enhancers	Brain Anterior Caudate	brain
18	chr7:66843200-66843800	Enhancers	Brain Cingulate Gyrus	brain
19	chr7:66843200-66843800	Enhancers	Brain Germinal Matrix	brain
20	chr7:66843200-66843800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr7:66843200-66843800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:66843200-66844000	Enhancers	Colon Smooth Muscle	Colon
23	chr7:66843200-66844000	Enhancers	Ovary	ovary
24	chr7:66843400-66843600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr7:66843400-66843600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr7:66843400-66843600	Enhancers	Esophagus	oesophagus
27	chr7:66843400-66843800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr7:66843400-66843800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:66843400-66843800	Enhancers	Fetal Lung	lung
30	chr7:66843400-66843800	Enhancers	Stomach Smooth Muscle	stomach

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