Variant report

Variant	rs568073055
Chromosome Location	chr6:33480507-33480508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33422288..33424743-chr6:33478570..33480571,2	MCF-7	breast:
2	chr6:33480361..33482958-chr6:33629089..33631311,2	K562	blood:
3	chr6:33393869..33396201-chr6:33479107..33481448,2	MCF-7	breast:
4	chr6:33479121..33484420-chr6:33487848..33490096,5	K562	blood:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3392894	chr6:33479074-33482772	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv528962	chr6:33480435-33485241	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:33477800-33480600	Weak transcription	GM12878-XiMat	blood
3	chr6:33479400-33480600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:33479800-33480600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:33479800-33480600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:33479800-33480600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:33479800-33480600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:33479800-33480600	Enhancers	Placenta	Placenta
9	chr6:33479800-33481000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:33479800-33481200	Enhancers	Fetal Thymus	thymus
11	chr6:33480000-33480600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:33480000-33480600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:33480000-33480600	Enhancers	Primary B cells from cord blood	blood
14	chr6:33480000-33480600	Enhancers	Primary T cells from cord blood	blood
15	chr6:33480000-33480600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:33480000-33480600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:33480000-33480600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:33480000-33480600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:33480000-33480600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:33480000-33480600	Enhancers	Pancreas	Pancrea
21	chr6:33480000-33480800	Enhancers	Thymus	Thymus
22	chr6:33480000-33481000	Enhancers	Spleen	Spleen
23	chr6:33480000-33481200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:33480200-33480600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:33480200-33480600	Bivalent Enhancer	K562	blood
26	chr6:33480200-33481400	Strong transcription	Right Atrium	heart
27	chr6:33480400-33480800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:33480400-33481000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:33480400-33481400	Enhancers	Primary neutrophils fromperipheralblood	blood

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