Variant report

Variant	rs56808894
Chromosome Location	chr17:59812317-59812318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59811677..59813444-chr17:59960734..59963454,2	MCF-7	breast:
2	chr17:59810421..59813072-chr17:59814552..59817092,2	K562	blood:
3	chr17:59810475..59813261-chr3:64636236..64638755,2	MCF-7	breast:
4	chr17:59489321..59490865-chr17:59811570..59814517,2	MCF-7	breast:
5	chr17:59810990..59813864-chr17:59880242..59882764,2	MCF-7	breast:
6	chr1:149856688..149858609-chr17:59810001..59812398,2	MCF-7	breast:
7	chr17:59811881..59814768-chr17:59833404..59835745,3	MCF-7	breast:
8	chr17:59806858..59808966-chr17:59809863..59812576,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10438772	1.00[EUR][1000 genomes]
rs55760831	1.00[EUR][1000 genomes]
rs8081151	1.00[EUR][1000 genomes]
rs9890276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335472	chr17:59803168-59821322	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
3	chr17:59784400-59815200	Weak transcription	HMEC	breast
4	chr17:59786600-59815400	Weak transcription	Fetal Thymus	thymus
5	chr17:59792000-59815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:59793200-59819400	Weak transcription	NH-A	brain
7	chr17:59793600-59821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:59794200-59815200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr17:59794200-59819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:59794400-59815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:59794400-59816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
13	chr17:59794800-59815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:59796200-59814400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr17:59797400-59817600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr17:59797600-59813000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:59798400-59815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:59798800-59816400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr17:59800800-59814400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr17:59801000-59815400	Weak transcription	HepG2	liver
21	chr17:59801200-59817400	Weak transcription	Small Intestine	intestine
22	chr17:59801600-59815000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:59801600-59816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr17:59804200-59814400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:59804200-59818800	Weak transcription	Brain Germinal Matrix	brain
26	chr17:59804200-59847400	Weak transcription	K562	blood
27	chr17:59804600-59834200	Weak transcription	Osteobl	bone
28	chr17:59805800-59815200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr17:59805800-59818800	Weak transcription	Fetal Muscle Leg	muscle
30	chr17:59806200-59815200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr17:59806200-59825600	Weak transcription	Thymus	Thymus
32	chr17:59806400-59814200	Weak transcription	A549	lung
33	chr17:59806800-59819800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr17:59807400-59814600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr17:59807600-59813000	Weak transcription	Dnd41	blood
36	chr17:59807600-59813200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr17:59807600-59813800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr17:59807600-59815200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr17:59807600-59838400	Weak transcription	Fetal Stomach	stomach
40	chr17:59808000-59814400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr17:59809200-59815200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr17:59809800-59814400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr17:59811200-59815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr17:59811600-59825200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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