Variant report

Variant	rs568092055
Chromosome Location	chr14:69333476-69333477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69331683..69333924-chr14:69444602..69446357,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv85448	chr14:69332829-69335669	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69310800-69336400	Weak transcription	NHLF	lung
2	chr14:69310800-69339800	Weak transcription	Right Ventricle	heart
3	chr14:69320600-69334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:69321200-69338000	Weak transcription	Gastric	stomach
5	chr14:69322400-69336600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:69323800-69337800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:69324800-69338600	Weak transcription	HepG2	liver
8	chr14:69328000-69334000	Weak transcription	NH-A	brain
9	chr14:69328200-69336600	Weak transcription	HMEC	breast
10	chr14:69328800-69336200	Weak transcription	HSMM	muscle
11	chr14:69329600-69338200	Weak transcription	Pancreas	Pancrea
12	chr14:69330000-69338400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:69330000-69351000	Weak transcription	Fetal Heart	heart
14	chr14:69330200-69338000	Weak transcription	Hela-S3	cervix
15	chr14:69330200-69338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:69330200-69348200	Weak transcription	K562	blood
17	chr14:69331200-69338200	Weak transcription	Colonic Mucosa	Colon
18	chr14:69331200-69350800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:69331400-69344600	Weak transcription	Brain Angular Gyrus	brain
20	chr14:69332600-69336600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:69332600-69337400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:69332800-69335800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:69332800-69336200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:69332800-69336200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:69332800-69336400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:69332800-69336400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr14:69332800-69336400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:69332800-69336400	Weak transcription	HSMMtube	muscle
29	chr14:69332800-69336400	Weak transcription	Osteobl	bone
30	chr14:69332800-69336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:69332800-69336800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:69332800-69337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:69332800-69337600	Weak transcription	Fetal Intestine Small	intestine
34	chr14:69332800-69337600	Weak transcription	Fetal Stomach	stomach
35	chr14:69332800-69337800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:69332800-69337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:69332800-69337800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:69332800-69337800	Weak transcription	A549	lung
39	chr14:69332800-69338000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:69332800-69338000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:69332800-69338000	Weak transcription	Liver	Liver
42	chr14:69332800-69338000	Weak transcription	HUVEC	blood vessel
43	chr14:69332800-69338000	Weak transcription	NHEK	skin
44	chr14:69332800-69338200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:69332800-69338200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:69332800-69338200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:69332800-69338200	Weak transcription	Esophagus	oesophagus
48	chr14:69332800-69338600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:69333000-69336400	Weak transcription	Primary T cells from cord blood	blood
50	chr14:69333000-69338200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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