Variant report

Variant	rs568143396
Chromosome Location	chr11:77629267-77629268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv975205	chr11:77628075-77671380	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77577400-77630800	Weak transcription	Fetal Heart	heart
2	chr11:77583400-77670600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:77583400-77690000	Weak transcription	Colonic Mucosa	Colon
4	chr11:77591800-77650400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:77592800-77690000	Weak transcription	Small Intestine	intestine
6	chr11:77595800-77671000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:77597600-77629400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:77597800-77633800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:77597800-77644200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:77597800-77644400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:77597800-77669800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:77597800-77671000	Weak transcription	Fetal Brain Male	brain
13	chr11:77597800-77678200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:77597800-77690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:77597800-77690000	Weak transcription	Esophagus	oesophagus
16	chr11:77597800-77690000	Weak transcription	Gastric	stomach
17	chr11:77601800-77629800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:77602000-77640600	Weak transcription	K562	blood
19	chr11:77602600-77644200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:77602800-77690000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:77603000-77637400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:77603200-77650200	Weak transcription	Fetal Brain Female	brain
23	chr11:77604800-77644200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:77612600-77637000	Weak transcription	Brain Anterior Caudate	brain
25	chr11:77614800-77638800	Weak transcription	Brain Angular Gyrus	brain
26	chr11:77614800-77700200	Weak transcription	Psoas Muscle	Psoas
27	chr11:77615000-77644200	Weak transcription	Spleen	Spleen
28	chr11:77615000-77656400	Weak transcription	Right Ventricle	heart
29	chr11:77615200-77637400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:77618200-77668200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:77618800-77635000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:77618800-77637200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:77618800-77644200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:77619000-77636600	Weak transcription	Placenta	Placenta
35	chr11:77619000-77667000	Weak transcription	Fetal Kidney	kidney
36	chr11:77619000-77668000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:77619200-77637200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:77619200-77637400	Weak transcription	GM12878-XiMat	blood
39	chr11:77620800-77642000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:77621800-77631200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:77622200-77630200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:77622200-77635600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:77622600-77636800	Weak transcription	Primary B cells from cord blood	blood
44	chr11:77622800-77634000	Weak transcription	Fetal Intestine Large	intestine
45	chr11:77625000-77630200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:77625000-77630400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:77625000-77630400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:77625200-77630000	Strong transcription	Dnd41	blood
49	chr11:77625800-77630400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:77625800-77665600	Weak transcription	HSMMtube	muscle

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