Variant report
| Variant | rs568168082 |
|---|---|
| Chromosome Location | chr19:39758727-39758728 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:19)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:19 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr19:39758680-39758830 | HRPEpiC | eye: | n/a | n/a |
| 2 | CTCF | chr19:39758700-39758850 | HRPEpiC | eye: | n/a | n/a |
| 3 | CTCF | chr19:39758700-39758850 | HCT-116 | colon: | n/a | n/a |
| 4 | CTCF | chr19:39758660-39758810 | HBMEC | blood vessel: | n/a | n/a |
| 5 | CTCF | chr19:39758683-39759152 | K562 | blood: | n/a | chr19:39758932-39758941 |
| 6 | CTCF | chr19:39758680-39758830 | A549 | lung: | n/a | n/a |
| 7 | CTCF | chr19:39758660-39758810 | RPTEC | kidney: | n/a | n/a |
| 8 | CTCF | chr19:39758660-39758810 | HepG2 | liver: | n/a | n/a |
| 9 | CTCF | chr19:39758700-39758850 | HFF-Myc | foreskin: | n/a | n/a |
| 10 | CTCF | chr19:39758649-39759152 | A549 | lung: | n/a | chr19:39758932-39758941 |
| 11 | CTCF | chr19:39758680-39758830 | MCF-7 | breast: | n/a | n/a |
| 12 | CTCF | chr19:39758700-39758850 | GM12872 | blood: | n/a | n/a |
| 13 | CTCF | chr19:39758680-39758830 | HAc | cerebellar: | n/a | n/a |
| 14 | CTCF | chr19:39758680-39758830 | GM12873 | blood: | n/a | n/a |
| 15 | CTCF | chr19:39758704-39759134 | A549 | lung: | n/a | chr19:39758932-39758941 |
| 16 | CTCF | chr19:39758680-39758830 | HCPEpiC | choroid plexus: | n/a | n/a |
| 17 | CTCF | chr19:39758680-39758830 | HCT-116 | colon: | n/a | n/a |
| 18 | EBF1 | chr19:39758662-39758960 | GM12878 | blood: | n/a | n/a |
| 19 | CTCF | chr19:39758660-39758810 | GM12868 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:39751549..39753214-chr19:39756259..39759130,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| IFNL2 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432048 | chr19:39572060-39850060 | Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | nsv833830 | chr19:39709538-39837846 | Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
| 3 | nsv911678 | chr19:39710903-39763765 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv911679 | chr19:39735106-39924129 | Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 198 gene(s) | inside rSNPs | diseases |
| 5 | nsv1058514 | chr19:39744112-39902580 | Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 187 gene(s) | inside rSNPs | diseases |
| 6 | nsv978814 | chr19:39756976-39760724 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
