Variant report

Variant	rs568183892
Chromosome Location	chr4:79759853-79759854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79752709..79756121-chr4:79759039..79764017,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007685	chr4:79732468-79788768	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79738800-79793200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:79744600-79793800	Weak transcription	Psoas Muscle	Psoas
3	chr4:79745400-79760400	Strong transcription	K562	blood
4	chr4:79745800-79786400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr4:79746600-79761000	Strong transcription	Primary B cells from cord blood	blood
6	chr4:79746800-79760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:79746800-79761000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:79746800-79783400	Weak transcription	A549	lung
9	chr4:79747200-79815600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:79748800-79823600	Weak transcription	Small Intestine	intestine
11	chr4:79749200-79773800	Weak transcription	Esophagus	oesophagus
12	chr4:79749200-79793600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:79749400-79780000	Weak transcription	HUVEC	blood vessel
14	chr4:79749400-79782000	Weak transcription	HepG2	liver
15	chr4:79749400-79792400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:79749400-79793800	Weak transcription	Gastric	stomach
17	chr4:79749600-79762200	Weak transcription	Pancreas	Pancrea
18	chr4:79749600-79766000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:79749600-79781000	Weak transcription	Ovary	ovary
20	chr4:79749600-79784600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:79749600-79793000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:79749600-79793600	Weak transcription	Brain Germinal Matrix	brain
23	chr4:79749600-79793800	Weak transcription	Fetal Brain Female	brain
24	chr4:79749800-79760000	Weak transcription	Spleen	Spleen
25	chr4:79749800-79761800	Weak transcription	Fetal Brain Male	brain
26	chr4:79749800-79762200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:79749800-79766200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:79749800-79772200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:79749800-79773600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:79749800-79781400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:79749800-79786800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:79749800-79788000	Weak transcription	Lung	lung
33	chr4:79749800-79793400	Weak transcription	Thymus	Thymus
34	chr4:79749800-79793600	Weak transcription	Colonic Mucosa	Colon
35	chr4:79750000-79766800	Weak transcription	Brain Substantia Nigra	brain
36	chr4:79750200-79762200	Weak transcription	Aorta	Aorta
37	chr4:79750200-79772200	Weak transcription	Placenta	Placenta
38	chr4:79750200-79786600	Weak transcription	Left Ventricle	heart
39	chr4:79750200-79787600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:79750400-79763800	Weak transcription	Brain Anterior Caudate	brain
41	chr4:79750400-79764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:79750400-79772600	Weak transcription	Dnd41	blood
43	chr4:79750400-79777800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:79750400-79783400	Weak transcription	NHEK	skin
45	chr4:79750400-79786800	Weak transcription	NH-A	brain
46	chr4:79750400-79791400	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:79750400-79792200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:79750400-79792600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:79750400-79793600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:79750400-79797000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links